RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 TSPY8P0CW00 308 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 ATP6V1E1P36543 226 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 TSPY1Q01534 308 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 NMIQ13287 307 aaPredicted RBP5.81□□□□□ -1.48
USP54-216ENST00000498143 ZNF605Q86T29 641 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 ANKRD35Q8N283 1001 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 GBP7Q8N8V2 638 aaPredicted RBP5.81□□□□□ -1.48
USP54-216ENST00000498143 CRACR2AQ9BSW2 395 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 LRP2BPQ9P2M1 347 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 LHX6Q9UPM6 363 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 COG6Q9Y2V7 657 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 SPHKAPQ2M3C7 1700 aa5.81□□□□□ -1.48
USP54-216ENST00000498143 FLNBO75369 2602 aaKnown RBP5.81□□□□□ -1.48
USP54-216ENST00000498143 ERLIN1O75477 346 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 NEBLO76041 1014 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 PRR29P0C7W0 189 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 ISM2Q6H9L7 571 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 NAA16Q6N069 864 aaPredicted RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 CYP2W1Q8TAV3 490 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 UBE2ZQ9H832 354 aaPredicted RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 FAM184BQ9ULE4 1060 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 SRPK3Q9UPE1 567 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 PTPDC1A2A3K4 754 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 CARNS1A5YM72 827 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 GPR37L1O60883 481 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 MYL3P08590 195 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 HIRAP54198 1017 aaPredicted RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 IRX1P78414 480 aaPredicted RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 VGLL4Q14135 290 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 Q3C1V9 767 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 GBP6Q6ZN66 633 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 ZNF365Q70YC5 407 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 TBC1D16Q8TBP0 767 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 MKL1Q969V6 931 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 TSPAN18Q96SJ8 248 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 DDX20Q9UHI6 824 aaKnown RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 RSPH14Q9UHP6 348 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 MAP3K15Q6ZN16 1313 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 ALKQ9UM73 1620 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 LDHBP07195 334 aaKnown RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 MCM5P33992 734 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 C19orf57Q0VDD7 668 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 ZNF467Q7Z7K2 595 aaPredicted RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 NME8Q8N427 588 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 USP33Q8TEY7 942 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 RSPH9Q9H1X1 276 aaPredicted RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 AAASQ9NRG9 546 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 GVINP1Q7Z2Y8 2422 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 CEP152O94986 1710 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 PLXNC1O60486 1568 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 ELL2O00472 640 aaPredicted RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 PRPF40AO75400 957 aaKnown RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 FCER1AP12319 257 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 CTNNB1P35222 781 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 USP14P54578 494 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 GSTO1P78417 241 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 RNF187Q5TA31 235 aaPredicted RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 INTS5Q6P9B9 1019 aaKnown RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 CCDC146Q8IYE0 955 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 TTC16Q8NEE8 873 aa5.8□□□□□ -1.48
USP54-216ENST00000498143 ZCCHC17Q9NP64 241 aaKnown RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 C6orf203Q9P0P8 240 aaPredicted RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 DBR1Q9UK59 544 aaKnown RBP5.8□□□□□ -1.48
USP54-216ENST00000498143 PABPN1LA6NDY0 278 aaKnown RBP5.79□□□□□ -1.48
USP54-216ENST00000498143 TMEM221A6NGB7 291 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 ERVV-1B6SEH8 477 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 M0R296 226 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 AMHP03971 560 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 MSL3P1P0C860 447 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 GPSM2P81274 684 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 GABPB1Q06547 395 aaPredicted RBP5.79□□□□□ -1.48
USP54-216ENST00000498143 SDR16C5Q8N3Y7 309 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 TDRD7Q8NHU6 1098 aaKnown RBP5.79□□□□□ -1.48
USP54-216ENST00000498143 BHMTQ93088 406 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 TRIM11Q96F44 468 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 TRERF1Q96PN7 1200 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 SEMA4AQ9H3S1 761 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 CCDC196A0A1B0GTZ2 297 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 FOSL1P15407 271 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 DESP17661 470 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 GTF2F1P35269 517 aaKnown RBP eCLIP5.79□□□□□ -1.48
USP54-216ENST00000498143 HMGCS2P54868 508 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 SEPT6Q14141 434 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 MAP7D1Q3KQU3 841 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 UAP1L1Q3KQV9 507 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 ARHGAP30Q7Z6I6 1101 aaPredicted RBP5.79□□□□□ -1.48
USP54-216ENST00000498143 XAGE3Q8WTP9 111 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 MRFAP1L1Q96HT8 127 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 NEUROD6Q96NK8 337 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 APBA2Q99767 749 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 THUMPD2Q9BTF0 503 aaKnown RBP5.79□□□□□ -1.48
USP54-216ENST00000498143 ABCC4O15439 1325 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 SIGLEC1Q9BZZ2 1709 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 CAPN8A6NHC0 703 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 TTC30AQ86WT1 665 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 TXLNBQ8N3L3 684 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 FAM184AQ8NB25 1140 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 FAM76AQ8TAV0 307 aa5.79□□□□□ -1.48
USP54-216ENST00000498143 NOC3LQ8WTT2 800 aaKnown RBP5.79□□□□□ -1.48
USP54-216ENST00000498143 NAP1L3Q99457 506 aaPredicted RBP5.79□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms