RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 BMP3P12645 472 aa22.38■■□□□ 1.17
SF3A1-205ENST00000463818 ALX1Q15699 326 aa22.38■■□□□ 1.17
SF3A1-205ENST00000463818 MCMDC2Q4G0Z9 681 aa22.38■■□□□ 1.17
SF3A1-205ENST00000463818 EXOC6Q8TAG9 804 aa22.38■■□□□ 1.17
SF3A1-205ENST00000463818 FAM227BQ96M60 508 aa22.38■■□□□ 1.17
SF3A1-205ENST00000463818 TINF2Q9BSI4 451 aa22.38■■□□□ 1.17
SF3A1-205ENST00000463818 RAVER2Q9HCJ3 691 aaKnown RBP22.38■■□□□ 1.17
SF3A1-205ENST00000463818 TACC3Q9Y6A5 838 aa22.38■■□□□ 1.17
SF3A1-205ENST00000463818 PLIN4Q96Q06 1357 aa22.38■■□□□ 1.17
SF3A1-205ENST00000463818 IGHDP01880 384 aa22.37■■□□□ 1.17
SF3A1-205ENST00000463818 BMP8BP34820 402 aa22.37■■□□□ 1.17
SF3A1-205ENST00000463818 MAGEA10P43363 369 aaPredicted RBP22.37■■□□□ 1.17
SF3A1-205ENST00000463818 TICAM2Q86XR7 235 aa22.37■■□□□ 1.17
SF3A1-205ENST00000463818 DDX11Q96FC9 970 aa22.37■■□□□ 1.17
SF3A1-205ENST00000463818 SLC38A10Q9HBR0 1119 aa22.37■■□□□ 1.17
SF3A1-205ENST00000463818 NRBP1Q9UHY1 535 aa22.37■■□□□ 1.17
SF3A1-205ENST00000463818 ANAPC4Q9UJX5 808 aa22.37■■□□□ 1.17
SF3A1-205ENST00000463818 GREB1LQ9C091 1923 aaPredicted RBP22.37■■□□□ 1.17
SF3A1-205ENST00000463818 A0A0D9SFI3 127 aa22.36■■□□□ 1.17
SF3A1-205ENST00000463818 TSPY2A6NKD2 308 aa22.36■■□□□ 1.17
SF3A1-205ENST00000463818 TRIM6-TRIM34B2RNG4 842 aa22.36■■□□□ 1.17
SF3A1-205ENST00000463818 TMEM232C9JQI7 657 aa22.36■■□□□ 1.17
SF3A1-205ENST00000463818 MYCNP04198 464 aaPredicted RBP22.36■■□□□ 1.17
SF3A1-205ENST00000463818 ATN1P54259 1190 aaPredicted RBP22.36■■□□□ 1.17
SF3A1-205ENST00000463818 PPP4R3BQ5MIZ7 849 aa22.36■■□□□ 1.17
SF3A1-205ENST00000463818 CHMP4CQ96CF2 233 aa22.36■■□□□ 1.17
SF3A1-205ENST00000463818 IL17RBQ9NRM6 502 aa22.36■■□□□ 1.17
SF3A1-205ENST00000463818 RANBP6O60518 1105 aaKnown RBP22.35■■□□□ 1.17
SF3A1-205ENST00000463818 FGAP02671 866 aa22.35■■□□□ 1.17
SF3A1-205ENST00000463818 TAL1P17542 331 aaPredicted RBP22.35■■□□□ 1.17
SF3A1-205ENST00000463818 MCCP23508 829 aa22.35■■□□□ 1.17
SF3A1-205ENST00000463818 NMIQ13287 307 aaPredicted RBP22.35■■□□□ 1.17
SF3A1-205ENST00000463818 CHD1LQ86WJ1 897 aa22.35■■□□□ 1.17
SF3A1-205ENST00000463818 RILPL2Q969X0 211 aa22.35■■□□□ 1.17
SF3A1-205ENST00000463818 ISY1Q9ULR0 285 aaKnown RBP22.35■■□□□ 1.17
SF3A1-205ENST00000463818 STX8Q9UNK0 236 aa22.35■■□□□ 1.17
SF3A1-205ENST00000463818 ZNF236Q9UL36 1845 aa22.35■■□□□ 1.17
SF3A1-205ENST00000463818 ALPK3Q96L96 1907 aa22.34■■□□□ 1.17
SF3A1-205ENST00000463818 KBTBD13C9JR72 458 aa22.34■■□□□ 1.17
SF3A1-205ENST00000463818 NMT2O60551 498 aa22.34■■□□□ 1.17
SF3A1-205ENST00000463818 SLC1A4P43007 532 aa22.34■■□□□ 1.17
SF3A1-205ENST00000463818 CHURC1Q8WUH1 139 aa22.34■■□□□ 1.17
SF3A1-205ENST00000463818 STAG1Q8WVM7 1258 aa22.34■■□□□ 1.17
SF3A1-205ENST00000463818 GMCL1Q96IK5 515 aa22.34■■□□□ 1.17
SF3A1-205ENST00000463818 ORC4O43929 436 aa22.33■■□□□ 1.17
SF3A1-205ENST00000463818 FGRP09769 529 aa22.33■■□□□ 1.17
SF3A1-205ENST00000463818 FDX1P10109 184 aa22.33■■□□□ 1.17
SF3A1-205ENST00000463818 HSPD1P10809 573 aaKnown RBP22.33■■□□□ 1.17
SF3A1-205ENST00000463818 LRRC41Q15345 812 aa22.33■■□□□ 1.17
SF3A1-205ENST00000463818 PLEKHM2Q8IWE5 1019 aa22.33■■□□□ 1.17
SF3A1-205ENST00000463818 RANBP2P49792 3224 aaKnown RBP22.32■■□□□ 1.16
SF3A1-205ENST00000463818 DNAJC25-GNG10A0A024R161 153 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 ZNF865P0CJ78 1059 aaPredicted RBP22.32■■□□□ 1.16
SF3A1-205ENST00000463818 RARBP10826 455 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 STAT2P52630 851 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 OAZ1P54368 228 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 NUCB1Q02818 461 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 IKQ13123 557 aaPredicted RBP22.32■■□□□ 1.16
SF3A1-205ENST00000463818 RCSD1Q6JBY9 416 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 SLC39A5Q6ZMH5 540 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 ZNF589Q86UQ0 364 aaPredicted RBP22.32■■□□□ 1.16
SF3A1-205ENST00000463818 FAM160B2Q86V87 743 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 ANKRD35Q8N283 1001 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 MSL3Q8N5Y2 521 aaKnown RBP22.32■■□□□ 1.16
SF3A1-205ENST00000463818 CHST13Q8NET6 341 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 TOMM22Q9NS69 142 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 FBXO40Q9UH90 709 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 CNPY2Q9Y2B0 182 aa22.32■■□□□ 1.16
SF3A1-205ENST00000463818 PARP14Q460N5 1801 aa22.31■■□□□ 1.16
SF3A1-205ENST00000463818 SOX1O00570 391 aaPredicted RBP22.31■■□□□ 1.16
SF3A1-205ENST00000463818 ADCYAP1R1P41586 468 aa22.31■■□□□ 1.16
SF3A1-205ENST00000463818 RTP1P59025 263 aa22.31■■□□□ 1.16
SF3A1-205ENST00000463818 KCTD1Q719H9 257 aa22.31■■□□□ 1.16
SF3A1-205ENST00000463818 DHX30Q7L2E3 1194 aaKnown RBP eCLIP22.31■■□□□ 1.16
SF3A1-205ENST00000463818 UBE2OQ9C0C9 1292 aaKnown RBP22.31■■□□□ 1.16
SF3A1-205ENST00000463818 OSBPL3Q9H4L5 887 aa22.31■■□□□ 1.16
SF3A1-205ENST00000463818 XPNPEP3Q9NQH7 507 aa22.31■■□□□ 1.16
SF3A1-205ENST00000463818 PLA2G6O60733 806 aa22.3■■□□□ 1.16
SF3A1-205ENST00000463818 SNAI1O95863 264 aaPredicted RBP22.3■■□□□ 1.16
SF3A1-205ENST00000463818 SDSP20132 328 aa22.3■■□□□ 1.16
SF3A1-205ENST00000463818 NOVP48745 357 aa22.3■■□□□ 1.16
SF3A1-205ENST00000463818 MDM2Q00987 491 aaPredicted RBP22.3■■□□□ 1.16
SF3A1-205ENST00000463818 RRP12Q5JTH9 1297 aaKnown RBP22.3■■□□□ 1.16
SF3A1-205ENST00000463818 MAMDC4Q6UXC1 1216 aa22.3■■□□□ 1.16
SF3A1-205ENST00000463818 FERMT2Q96AC1 680 aa22.3■■□□□ 1.16
SF3A1-205ENST00000463818 MTMR7Q9Y216 660 aa22.3■■□□□ 1.16
SF3A1-205ENST00000463818 COL11A1P12107 1806 aaPredicted RBP22.29■■□□□ 1.16
SF3A1-205ENST00000463818 PGK1P00558 417 aa22.29■■□□□ 1.16
SF3A1-205ENST00000463818 AKR1A1P14550 325 aa22.29■■□□□ 1.16
SF3A1-205ENST00000463818 LRCH3Q96II8 777 aa22.29■■□□□ 1.16
SF3A1-205ENST00000463818 AGBL1Q96MI9 1066 aa22.29■■□□□ 1.16
SF3A1-205ENST00000463818 HOMER2Q9NSB8 354 aa22.29■■□□□ 1.16
SF3A1-205ENST00000463818 ATP11BQ9Y2G3 1177 aa22.29■■□□□ 1.16
SF3A1-205ENST00000463818 CCDC171Q6TFL3 1326 aa22.29■■□□□ 1.16
SF3A1-205ENST00000463818 SYNGAP1Q96PV0 1343 aa22.29■■□□□ 1.16
SF3A1-205ENST00000463818 ZNFX1Q9P2E3 1918 aaKnown RBP22.28■■□□□ 1.16
SF3A1-205ENST00000463818 HAND2P61296 217 aa22.28■■□□□ 1.16
SF3A1-205ENST00000463818 ZNF467Q7Z7K2 595 aaPredicted RBP22.28■■□□□ 1.16
SF3A1-205ENST00000463818 RNF180Q86T96 592 aa22.28■■□□□ 1.16
SF3A1-205ENST00000463818 FAM184BQ9ULE4 1060 aa22.28■■□□□ 1.16
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms