RNA–Protein interactions for RNA: ENST00000424265.5

USP54-205, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 5,201 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-205ENST00000424265 RBM26Q5T8P6 1007 aaKnown RBP10.95□□□□□ -0.66
USP54-205ENST00000424265 BRF1Q92994 677 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 MTA3Q9BTC8 594 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 STX8Q9UNK0 236 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 JAG2Q9Y219 1238 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 NRAPQ86VF7 1730 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 CRYBG1Q9Y4K1 1723 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 SESN3P58005 492 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 HDLBPQ00341 1268 aaKnown RBP10.95□□□□□ -0.66
USP54-205ENST00000424265 TSGA10IPQ3SY00 556 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 CC2D1AQ6P1N0 951 aaPredicted RBP10.95□□□□□ -0.66
USP54-205ENST00000424265 LLPHQ9BRT6 129 aaKnown RBP10.95□□□□□ -0.66
USP54-205ENST00000424265 GLI3P10071 1580 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 SKAP2O75563 359 aaPredicted RBP10.95□□□□□ -0.66
USP54-205ENST00000424265 CA8P35219 290 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 TBC1D8BQ0IIM8 1120 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 PRPF4BQ13523 1007 aaKnown RBP10.95□□□□□ -0.66
USP54-205ENST00000424265 Q6ZUG5 572 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 KIAA0825Q8IV33 1275 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 CCDC83Q8IWF9 413 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 C8orf76Q96K31 380 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 GLT8D2Q9H1C3 349 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 DBNDD1Q9H9R9 158 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 ANGEL1Q9UNK9 670 aaKnown RBP10.95□□□□□ -0.66
USP54-205ENST00000424265 PSDA5PKW4 1024 aaPredicted RBP10.95□□□□□ -0.66
USP54-205ENST00000424265 DPEP1P16444 411 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 ALX1Q15699 326 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 C1QTNF12Q5T7M4 302 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 TGFBRAP1Q8WUH2 860 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 MPHOSPH6Q99547 160 aaKnown RBP10.95□□□□□ -0.66
USP54-205ENST00000424265 PICK1Q9NRD5 415 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 FRMD4BQ9Y2L6 1034 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 RIC1Q4ADV7 1423 aa10.95□□□□□ -0.66
USP54-205ENST00000424265 GADD45BO75293 160 aaPredicted RBP10.94□□□□□ -0.66
USP54-205ENST00000424265 BATF3Q9NR55 127 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 ZNF232Q9UNY5 417 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 SNX14Q9Y5W7 946 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 SMIM24O75264 130 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 USP17L8P0C7I0 530 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 DDR1Q08345 913 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 WHAMMQ8TF30 809 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 RMDN2Q96LZ7 410 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 AS3MTQ9HBK9 375 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 BRD3Q15059 726 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 FOXR1Q6PIV2 292 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 BICD2Q8TD16 824 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 DCPSQ96C86 337 aaKnown RBP10.94□□□□□ -0.66
USP54-205ENST00000424265 TSC22D3Q99576 134 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 CREB3O43889 395 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 SFPQP23246 707 aaKnown RBP eCLIP10.94□□□□□ -0.66
USP54-205ENST00000424265 CHRNA5P30532 468 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 MECOMQ03112 1051 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 CAMK4Q16566 473 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 CCDC129Q6ZRS4 1044 aa10.94□□□□□ -0.66
USP54-205ENST00000424265 TDRD7Q8NHU6 1098 aaKnown RBP10.94□□□□□ -0.66
USP54-205ENST00000424265 UTP18Q9Y5J1 556 aaKnown RBP eCLIP10.94□□□□□ -0.66
USP54-205ENST00000424265 BMP15O95972 392 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 E2F5Q15329 346 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 SUPT20HL1Q3ZLR7 823 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 LRRC31Q6UY01 552 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 FAM204AQ9H8W3 233 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 MROH7-TTC4A0A0A0MT08 1334 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 ZSCAN12O43309 604 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 FGFR2P21802 821 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 ACTN3Q08043 901 aaPredicted RBP10.93□□□□□ -0.66
USP54-205ENST00000424265 STK38Q15208 465 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 CRY2Q49AN0 593 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 LSG1Q9H089 658 aaKnown RBP10.93□□□□□ -0.66
USP54-205ENST00000424265 PIH1D3Q9NQM4 214 aaKnown RBP10.93□□□□□ -0.66
USP54-205ENST00000424265 HOMER3Q9NSC5 361 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 IMPDH2P12268 514 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 CALML3P27482 149 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 FKBP1AP62942 108 aaKnown RBP10.93□□□□□ -0.66
USP54-205ENST00000424265 LONRF2Q1L5Z9 754 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 PTF1AQ7RTS3 328 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 DRAXINQ8NBI3 349 aaPredicted RBP10.93□□□□□ -0.66
USP54-205ENST00000424265 TCHPQ9BT92 498 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 A1CFQ9NQ94 594 aaKnown RBP10.93□□□□□ -0.66
USP54-205ENST00000424265 NRBP1Q9UHY1 535 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 CEP104O60308 925 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 CYP2E1P05181 493 aaPredicted RBP10.93□□□□□ -0.66
USP54-205ENST00000424265 CCDC175P0C221 793 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 DESP17661 470 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 MICU3Q86XE3 530 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 FOXP4Q8IVH2 680 aaPredicted RBP10.93□□□□□ -0.66
USP54-205ENST00000424265 MAPKAPK5Q8IW41 473 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 FAM76AQ8TAV0 307 aa10.93□□□□□ -0.66
USP54-205ENST00000424265 EDC3Q96F86 508 aaKnown RBP10.93□□□□□ -0.66
USP54-205ENST00000424265 PPP2R3AQ06190 1150 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 ANO6Q4KMQ2 910 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 GET4Q7L5D6 327 aaPredicted RBP10.92□□□□□ -0.66
USP54-205ENST00000424265 SPATA21Q7Z572 469 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 SPATS2Q86XZ4 545 aaKnown RBP10.92□□□□□ -0.66
USP54-205ENST00000424265 SULF1Q8IWU6 871 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 TMX3Q96JJ7 454 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 WWC3Q9ULE0 1092 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 B4DLN1 442 aa10.92□□□□□ -0.66
USP54-205ENST00000424265 MRPL12P52815 198 aaKnown RBP10.92□□□□□ -0.66
USP54-205ENST00000424265 PREPLQ4J6C6 727 aaPredicted RBP10.92□□□□□ -0.66
USP54-205ENST00000424265 HHIPL2Q6UWX4 724 aa10.92□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms