RNA–Protein interactions for RNA: ENST00000373720.3

SNRNP40-202, Transcript of small nuclear ribonucleoprotein U5 subunit 40, humanhuman

TSL 1 (best) BASIC

Gene SNRNP40, Length 1,087 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNRNP40-202ENST00000373720 TMEM47Q9BQJ4 181 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 FTOQ9C0B1 505 aaKnown RBP eCLIP9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 CCSER1Q9C0I3 900 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 RIOX1Q9H6W3 641 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 INCENPQ9NQS7 918 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 IL17RBQ9NRM6 502 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 MAD2L2Q9UI95 211 aa9.91□□□□□ -0.82
SNRNP40-202ENST00000373720 NAV1Q8NEY1 1877 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 PSDA5PKW4 1024 aaPredicted RBP9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 KLRF2D3W0D1 207 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 M0R2N6 131 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 DYNC1I1O14576 645 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 POLR2DO15514 142 aaKnown RBP9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 ENTPD3O75355 529 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 PRDM1O75626 825 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 HOXB3P14651 431 aaPredicted RBP9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 GCFC2P16383 781 aaKnown RBP9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 MORC3Q14149 939 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 PDIA5Q14554 519 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 DOK7Q18PE1 504 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 LONRF3Q496Y0 759 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 FOXR2Q6PJQ5 311 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 DTHD1Q6ZMT9 781 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 SH3RF1Q7Z6J0 888 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 AMIGO3Q86WK7 504 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 LRRC8AQ8IWT6 810 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 AIFM3Q96NN9 605 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 MTMR4Q9NYA4 1195 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 VPS54Q9P1Q0 977 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 KCNJ14Q9UNX9 436 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 DAGLAQ9Y4D2 1042 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 PCDHB6Q9Y5E3 794 aa9.9□□□□□ -0.82
SNRNP40-202ENST00000373720 DDX60LQ5H9U9 1706 aaKnown RBP9.9□□□□□ -0.83
SNRNP40-202ENST00000373720 FOCADQ5VW36 1801 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 IGKV6D-41A0A0C4DH26 115 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 PLEKHA8P1O95397 391 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 HOXB1P14653 301 aaPredicted RBP9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 GTF2F1P35269 517 aaKnown RBP eCLIP9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 MRPL12P52815 198 aaKnown RBP9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 FOSBP53539 338 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 GTF2IP78347 998 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 NR5A1Q13285 461 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 STIM1Q13586 685 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 KCNB1Q14721 858 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 NONOQ15233 471 aaKnown RBP eCLIP9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 FILIP1LQ4L180 1135 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 FAM47AQ5JRC9 791 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 FKBP1CQ5VVH2 108 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 C11orf57Q6ZUT1 292 aaPredicted RBP9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 CCDC186Q7Z3E2 898 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 METTL16Q86W50 562 aaKnown RBP9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 COL23A1Q86Y22 540 aaPredicted RBP9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 RAB11FIP4Q86YS3 637 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 RTKN2Q8IZC4 609 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 AOPEPQ8N6M6 819 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 NOC3LQ8WTT2 800 aaKnown RBP9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 KANSL2Q9H9L4 492 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 PI4KBQ9UBF8 816 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 STX8Q9UNK0 236 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 TTF2Q9UNY4 1162 aaKnown RBP9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 PCDHA5Q9Y5H7 936 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 MYH6P13533 1939 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 MYH2Q9UKX2 1941 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 TAF1P21675 1872 aa9.89□□□□□ -0.83
SNRNP40-202ENST00000373720 BAZ2AQ9UIF9 1905 aaKnown RBP9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 CYP2D7A0A087X1C5 515 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 PNMA6FA0A0J9YX94 578 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 ACTN4O43707 911 aaKnown RBP9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 GTPBP6O43824 516 aaPredicted RBP9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 SFPQP23246 707 aaKnown RBP eCLIP9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 PTGDRQ13258 359 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 NCAPHQ15003 741 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 SEPT2Q15019 361 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 SYCP1Q15431 976 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 DIXDC1Q155Q3 683 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 NPY5RQ15761 445 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 DPCR1Q3MIW9 517 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 COBLL1Q53SF7 1204 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 DNTTIP2Q5QJE6 756 aaKnown RBP9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 FAM182BQ5T319 152 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 PPP4R3AQ6IN85 833 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 MOXD1Q6UVY6 613 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 MAPKAPK5Q8IW41 473 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 CCDC82Q8N4S0 544 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 NKX2-3Q8TAU0 364 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 DCAF4Q8WV16 495 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 CCDC51Q96ER9 411 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 NAA15Q9BXJ9 866 aaKnown RBP9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 CSRNP2Q9H175 543 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 GJB4Q9NTQ9 266 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 GINM1Q9NU53 330 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 STK32BQ9NY57 414 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 NYAP2Q9P242 653 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 PNMA2Q9UL42 364 aa9.88□□□□□ -0.83
SNRNP40-202ENST00000373720 ECM29Q5VYK3 1845 aa9.87□□□□□ -0.83
SNRNP40-202ENST00000373720 BRWD3Q6RI45 1802 aa9.87□□□□□ -0.83
SNRNP40-202ENST00000373720 USP17L3A6NCW0 530 aa9.87□□□□□ -0.83
SNRNP40-202ENST00000373720 USP17L4A6NCW7 530 aa9.87□□□□□ -0.83
SNRNP40-202ENST00000373720 LRRC10BA6NIK2 292 aa9.87□□□□□ -0.83
SNRNP40-202ENST00000373720 WTIPA6NIX2 430 aaPredicted RBP9.87□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms