RNA–Protein interactions for RNA: YGR072W

UPF3, Transcript of Component of the nonsense-mediated mRNA decay (NMD) pathway, yeastyeast

Gene UPF3, Length 1,164 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
UPF3YGR072W VTC2P43585 828 aa3.5□□□□□ -1.85
UPF3YGR072W RMD8P43620 662 aa3.5□□□□□ -1.85
UPF3YGR072W MSY1P48527 492 aa3.5□□□□□ -1.85
UPF3YGR072W YRB30P53107 440 aaPredicted RBP3.5□□□□□ -1.85
UPF3YGR072W YAT1P80235 687 aa3.5□□□□□ -1.85
UPF3YGR072W RAD33Q04231 177 aa3.5□□□□□ -1.85
UPF3YGR072W NMD4Q12129 218 aa3.5□□□□□ -1.85
UPF3YGR072W SCM3Q12334 223 aa3.5□□□□□ -1.85
UPF3YGR072W YOR019WQ99248 730 aa3.5□□□□□ -1.85
UPF3YGR072W BI2P03873 423 aa3.49□□□□□ -1.85
UPF3YGR072W SUI3P09064 285 aaKnown RBP3.49□□□□□ -1.85
UPF3YGR072W SOF1P33750 489 aaKnown RBP3.49□□□□□ -1.85
UPF3YGR072W KES1P35844 434 aaKnown RBP3.49□□□□□ -1.85
UPF3YGR072W SEC31P38968 1273 aaKnown RBP3.49□□□□□ -1.85
UPF3YGR072W CFD1P40558 293 aa3.49□□□□□ -1.85
UPF3YGR072W IRC6P43615 237 aa3.49□□□□□ -1.85
UPF3YGR072W PIL1P53252 339 aaKnown RBP3.49□□□□□ -1.85
UPF3YGR072W IST1P53843 298 aaPredicted RBP3.49□□□□□ -1.85
UPF3YGR072W YPL071CQ02864 156 aa3.49□□□□□ -1.85
UPF3YGR072W PSR1Q07800 427 aa3.49□□□□□ -1.85
UPF3YGR072W RIX7Q07844 837 aaKnown RBP3.49□□□□□ -1.85
UPF3YGR072W CTI6Q08923 506 aa3.49□□□□□ -1.85
UPF3YGR072W SFI1Q12369 946 aa3.49□□□□□ -1.85
UPF3YGR072W HSH49Q99181 213 aaPredicted RBP3.49□□□□□ -1.85
UPF3YGR072W MET8P15807 274 aa3.48□□□□□ -1.85
UPF3YGR072W FUR1P18562 216 aaKnown RBP3.48□□□□□ -1.85
UPF3YGR072W VMA16P23968 213 aa3.48□□□□□ -1.85
UPF3YGR072W RRP43P25359 394 aaPredicted RBP3.48□□□□□ -1.85
UPF3YGR072W OCA4P25366 362 aa3.48□□□□□ -1.85
UPF3YGR072W PTC6P25646 442 aa3.48□□□□□ -1.85
UPF3YGR072W AUR1P36107 401 aaPredicted RBP3.48□□□□□ -1.85
UPF3YGR072W AAP1P37898 856 aaKnown RBP3.48□□□□□ -1.85
UPF3YGR072W MAL33P38157 468 aa3.48□□□□□ -1.85
UPF3YGR072W YNG2P38806 282 aaKnown RBP3.48□□□□□ -1.85
UPF3YGR072W YAT2P40017 923 aa3.48□□□□□ -1.85
UPF3YGR072W FMP10P40098 244 aa3.48□□□□□ -1.85
UPF3YGR072W COP1P53622 1201 aaKnown RBP3.48□□□□□ -1.85
UPF3YGR072W INN1P53901 409 aa3.48□□□□□ -1.85
UPF3YGR072W ADE16P54113 591 aaKnown RBP3.48□□□□□ -1.85
UPF3YGR072W INA17Q02888 182 aa3.48□□□□□ -1.85
UPF3YGR072W MFB1Q04922 465 aa3.48□□□□□ -1.85
UPF3YGR072W BUD7Q08754 746 aa3.48□□□□□ -1.85
UPF3YGR072W ERP4Q12450 207 aa3.48□□□□□ -1.85
UPF3YGR072W HXK2P04807 486 aaKnown RBP3.47□□□□□ -1.85
UPF3YGR072W SES1P07284 462 aaKnown RBP3.47□□□□□ -1.85
UPF3YGR072W CKA1P15790 372 aa3.47□□□□□ -1.85
UPF3YGR072W YCP4P25349 247 aaKnown RBP3.47□□□□□ -1.85
UPF3YGR072W YJU2P28320 278 aaPredicted RBP3.47□□□□□ -1.85
UPF3YGR072W PDB1P32473 366 aaKnown RBP3.47□□□□□ -1.85
UPF3YGR072W ATO2P32907 282 aa3.47□□□□□ -1.85
UPF3YGR072W NTR2P36118 322 aaPredicted RBP3.47□□□□□ -1.85
UPF3YGR072W NPR2P39923 615 aa3.47□□□□□ -1.85
UPF3YGR072W RPN11P43588 306 aaKnown RBP3.47□□□□□ -1.85
UPF3YGR072W IRC7P43623 340 aa3.47□□□□□ -1.85
UPF3YGR072W YGR066CP53242 292 aa3.47□□□□□ -1.85
UPF3YGR072W VPS75P53853 264 aa3.47□□□□□ -1.85
UPF3YGR072W RSM28Q03430 361 aa3.47□□□□□ -1.85
UPF3YGR072W SYF1Q04048 859 aaPredicted RBP3.47□□□□□ -1.85
UPF3YGR072W BUD22Q04347 519 aaKnown RBP3.47□□□□□ -1.85
UPF3YGR072W HRD3Q05787 833 aa3.47□□□□□ -1.85
UPF3YGR072W SRL1Q08673 210 aa3.47□□□□□ -1.85
UPF3YGR072W YOR389WQ08912 624 aa3.47□□□□□ -1.85
UPF3YGR072W LEA1Q08963 238 aaPredicted RBP3.47□□□□□ -1.85
UPF3YGR072W CET1O13297 549 aaPredicted RBP3.46□□□□□ -1.86
UPF3YGR072W YPT1P01123 206 aaKnown RBP3.46□□□□□ -1.86
UPF3YGR072W ARG3P05150 338 aa3.46□□□□□ -1.86
UPF3YGR072W CBS1P14066 229 aa3.46□□□□□ -1.86
UPF3YGR072W RED1P14291 827 aa3.46□□□□□ -1.86
UPF3YGR072W SPE2P21182 396 aa3.46□□□□□ -1.86
UPF3YGR072W NPL6P32832 435 aa3.46□□□□□ -1.86
UPF3YGR072W REG2P38232 338 aa3.46□□□□□ -1.86
UPF3YGR072W MUM2P38236 366 aa3.46□□□□□ -1.86
UPF3YGR072W FLO5P38894 1075 aa3.46□□□□□ -1.86
UPF3YGR072W AFG3P39925 761 aa3.46□□□□□ -1.86
UPF3YGR072W BUR6P40096 142 aa3.46□□□□□ -1.86
UPF3YGR072W SEC24P40482 926 aaKnown RBP3.46□□□□□ -1.86
UPF3YGR072W MRX6P48564 524 aa3.46□□□□□ -1.86
UPF3YGR072W DSD1P53095 428 aa3.46□□□□□ -1.86
UPF3YGR072W ARE2P53629 642 aaKnown RBP3.46□□□□□ -1.86
UPF3YGR072W RPL15BP54780 204 aaPredicted RBP3.46□□□□□ -1.86
UPF3YGR072W TIM10P87108 93 aa3.46□□□□□ -1.86
UPF3YGR072W TAF11Q04226 346 aa3.46□□□□□ -1.86
UPF3YGR072W MRP2P10663 115 aaPredicted RBP3.45□□□□□ -1.86
UPF3YGR072W SRP54P20424 541 aaKnown RBP3.45□□□□□ -1.86
UPF3YGR072W YSP3P25036 478 aa3.45□□□□□ -1.86
UPF3YGR072W ADH7P25377 361 aa3.45□□□□□ -1.86
UPF3YGR072W POL4P25615 582 aa3.45□□□□□ -1.86
UPF3YGR072W YIH1P25637 258 aa3.45□□□□□ -1.86
UPF3YGR072W MSS51P32335 436 aa3.45□□□□□ -1.86
UPF3YGR072W DIA4P38705 446 aaPredicted RBP3.45□□□□□ -1.86
UPF3YGR072W RGI2P40188 164 aa3.45□□□□□ -1.86
UPF3YGR072W SWP82P43554 623 aa3.45□□□□□ -1.86
UPF3YGR072W DPB11P47027 764 aaPredicted RBP3.45□□□□□ -1.86
UPF3YGR072W SMC3P47037 1230 aa3.45□□□□□ -1.86
UPF3YGR072W LYS20P48570 428 aaKnown RBP3.45□□□□□ -1.86
UPF3YGR072W STR3P53101 465 aaKnown RBP3.45□□□□□ -1.86
UPF3YGR072W YNR061CP53747 219 aa3.45□□□□□ -1.86
UPF3YGR072W YML037CQ03703 340 aa3.45□□□□□ -1.86
UPF3YGR072W CYK3Q07533 885 aa3.45□□□□□ -1.86
UPF3YGR072W SNA4Q07549 140 aa3.45□□□□□ -1.86
Retrieved 100 of 5,963 RNA–protein pairs in 14 ms