RNA–Protein interactions for RNA: YFL001W

DEG1, Transcript of tRNA:pseudouridine synthase, yeast

Gene DEG1, Length 1,329 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
DEG1	YFL001W	BUD7	Q08754	746 aa		5.02	□□□□□ -1.61
DEG1	YFL001W	RIM20	Q12033	661 aa		5.02	□□□□□ -1.61
DEG1	YFL001W	MDM20	Q12387	796 aa	Known RBP	5.02	□□□□□ -1.61
DEG1	YFL001W	SES1	P07284	462 aa	Known RBP	5.01	□□□□□ -1.61
DEG1	YFL001W	ARD1	P07347	238 aa	Predicted RBP	5.01	□□□□□ -1.61
DEG1	YFL001W	ILS1	P09436	1072 aa	Known RBP	5.01	□□□□□ -1.61
DEG1	YFL001W	RRP43	P25359	394 aa	Predicted RBP	5.01	□□□□□ -1.61
DEG1	YFL001W	ADK2	P26364	225 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	CST26	P38226	397 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	SAP1	P39955	897 aa	Known RBP	5.01	□□□□□ -1.61
DEG1	YFL001W	LTP1	P40347	161 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	YGL117W	P53133	265 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	NNF2	P53253	936 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	RMT2	Q03305	412 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	RSM28	Q03430	361 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	WAR1	Q03631	944 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	PLM2	Q04383	521 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	YLR345W	Q06137	509 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	TAF3	Q12297	353 aa		5.01	□□□□□ -1.61
DEG1	YFL001W	TOP2	P06786	1428 aa	Known RBP	5.01	□□□□□ -1.61
DEG1	YFL001W	VMA16	P23968	213 aa		5	□□□□□ -1.61
DEG1	YFL001W	GPI10	P30777	616 aa		5	□□□□□ -1.61
DEG1	YFL001W	MRPL9	P31334	269 aa		5	□□□□□ -1.61
DEG1	YFL001W	TRM2	P33753	639 aa		5	□□□□□ -1.61
DEG1	YFL001W	DIA4	P38705	446 aa	Predicted RBP	5	□□□□□ -1.61
DEG1	YFL001W	SGN1	P40561	250 aa	Known RBP RIP-Chip data	5	□□□□□ -1.61	not detected
DEG1	YFL001W	MUK1	Q02866	612 aa		5	□□□□□ -1.61
DEG1	YFL001W	HRD3	Q05787	833 aa		5	□□□□□ -1.61
DEG1	YFL001W	ISA2	Q12425	185 aa		5	□□□□□ -1.61
DEG1	YFL001W	TPK2	P06245	380 aa		4.99	□□□□□ -1.61
DEG1	YFL001W	PMS1	P14242	873 aa		4.99	□□□□□ -1.61
DEG1	YFL001W	SOF1	P33750	489 aa	Known RBP	4.99	□□□□□ -1.61
DEG1	YFL001W	MRX1	P40050	688 aa		4.99	□□□□□ -1.61
DEG1	YFL001W	BUR6	P40096	142 aa		4.99	□□□□□ -1.61
DEG1	YFL001W	DOT5	P40553	215 aa		4.99	□□□□□ -1.61
DEG1	YFL001W	RPS7B	P48164	190 aa	Known RBP	4.99	□□□□□ -1.61
DEG1	YFL001W	VID30	P53076	958 aa		4.99	□□□□□ -1.61
DEG1	YFL001W	IST1	P53843	298 aa	Predicted RBP	4.99	□□□□□ -1.61
DEG1	YFL001W	VPS9	P54787	451 aa		4.99	□□□□□ -1.61
DEG1	YFL001W	VPS38	Q05919	439 aa		4.99	□□□□□ -1.61
DEG1	YFL001W	LUC7	Q07508	261 aa	Predicted RBP	4.99	□□□□□ -1.61
DEG1	YFL001W	FMP40	Q08968	688 aa	Predicted RBP	4.99	□□□□□ -1.61
DEG1	YFL001W	AHA1	Q12449	350 aa	Known RBP	4.99	□□□□□ -1.61
DEG1	YFL001W	AVL9	Q12500	764 aa		4.99	□□□□□ -1.61
DEG1	YFL001W	STU1	P38198	1513 aa		4.99	□□□□□ -1.61
DEG1	YFL001W	YCF1	P39109	1515 aa	Known RBP	4.99	□□□□□ -1.61
DEG1	YFL001W	HXK2	P04807	486 aa	Known RBP	4.98	□□□□□ -1.61
DEG1	YFL001W	CLB3	P24870	427 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	ADH7	P25377	361 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	SAS3	P34218	831 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	LHS1	P36016	881 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	MNN2	P38069	597 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	UIP3	P39547	235 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	ECM10	P39987	644 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	JEM1	P40358	645 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	ASG1	P40467	964 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	YFL015C	P43578	164 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	SGF73	P53165	657 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	BOP3	P53958	396 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	YMR206W	Q03695	313 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	ARG7	Q04728	441 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	MRD1	Q06106	887 aa	Known RBP	4.98	□□□□□ -1.61
DEG1	YFL001W	HBT1	Q07653	1046 aa	Known RBP	4.98	□□□□□ -1.61
DEG1	YFL001W	ATG29	Q12092	213 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	ACF2	Q12168	779 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	RKR1	Q04781	1562 aa		4.98	□□□□□ -1.61
DEG1	YFL001W	MF(ALPHA)1	P01149	165 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	RPL7A	P05737	244 aa	Known RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	PMA2	P19657	947 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	YJU2	P28320	278 aa	Predicted RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	OPT1	P40897	799 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	TDA10	P42938	290 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	DPB11	P47027	764 aa	Predicted RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	DIA3	P52290	468 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	CIK1	Q01649	594 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	AAT1	Q01802	451 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	RQC1	Q05468	723 aa	Known RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	ATG9	Q12142	997 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	RPL7B	Q12213	244 aa	Known RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	YOR1	P53049	1477 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	GAL80	P04387	435 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	SYN8	P31377	255 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	SSE2	P32590	693 aa	Known RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	TOA1	P32773	286 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	MRE11	P32829	692 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	WBP1	P33767	430 aa	Known RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	GCS1	P35197	352 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	YPT53	P36019	220 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	SNU114	P36048	1008 aa	Known RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	STB6	P36085	766 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	TCD2	P36101	447 aa	Known RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	AFG3	P39925	761 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	PKP1	P40530	394 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	SSU1	P41930	458 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	IRC8	P47046	822 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	PET130	P47065	347 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	ASN1	P49089	572 aa	Known RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	VPS73	P53142	486 aa	Known RBP	4.97	□□□□□ -1.61
DEG1	YFL001W	TWF1	P53250	332 aa		4.97	□□□□□ -1.61
DEG1	YFL001W	EFM6	P53970	246 aa		4.97	□□□□□ -1.61

Retrieved 100 of 5,963 RNA–protein pairs in 50.6 ms