RNA–Protein interactions for RNA: YDL164C

CDC9, Transcript of DNA ligase found in the nucleus and mitochondria, yeastyeast

Gene CDC9, Length 2,268 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
CDC9YDL164C GCD14P46959 383 aaPredicted RBP4.4□□□□□ -1.71
CDC9YDL164C PUS2P53167 370 aa4.4□□□□□ -1.71
CDC9YDL164C MDR1P53258 950 aa4.4□□□□□ -1.71
CDC9YDL164C UTP6Q02354 440 aaKnown RBP4.4□□□□□ -1.71
CDC9YDL164C KAP120Q02932 1032 aa4.4□□□□□ -1.71
CDC9YDL164C STE23Q06010 1027 aa4.4□□□□□ -1.71
CDC9YDL164C SGS1P35187 1447 aa4.4□□□□□ -1.71
CDC9YDL164C RNA1P11745 407 aaKnown RBP4.39□□□□□ -1.71
CDC9YDL164C TCD2P36101 447 aaKnown RBP4.39□□□□□ -1.71
CDC9YDL164C SLM4P38247 162 aa4.39□□□□□ -1.71
CDC9YDL164C INA22P40576 216 aa4.39□□□□□ -1.71
CDC9YDL164C PRP31P49704 494 aaPredicted RBP4.39□□□□□ -1.71
CDC9YDL164C ASI2P53895 289 aa4.39□□□□□ -1.71
CDC9YDL164C SMA2Q04658 369 aa4.39□□□□□ -1.71
CDC9YDL164C GSH2Q08220 491 aa4.39□□□□□ -1.71
CDC9YDL164C YOL159CQ08300 171 aa4.39□□□□□ -1.71
CDC9YDL164C TRE1Q08919 783 aa4.39□□□□□ -1.71
CDC9YDL164C RPS9BP05755 195 aaKnown RBP4.39□□□□□ -1.71
CDC9YDL164C PAP1P29468 568 aaKnown RBP4.39□□□□□ -1.71
CDC9YDL164C TPO5P36029 618 aa4.39□□□□□ -1.71
CDC9YDL164C KTR3P38130 404 aaPredicted RBP4.39□□□□□ -1.71
CDC9YDL164C ACO2P39533 789 aa4.39□□□□□ -1.71
CDC9YDL164C IAH1P41734 238 aa4.39□□□□□ -1.71
CDC9YDL164C LOC1P43586 204 aaPredicted RBP4.39□□□□□ -1.71
CDC9YDL164C REX2P54964 269 aaKnown RBP4.39□□□□□ -1.71
CDC9YDL164C CWC21Q03375 135 aaKnown RBP4.39□□□□□ -1.71
CDC9YDL164C TY1A-MR1Q04215 440 aa4.39□□□□□ -1.71
CDC9YDL164C CRF1Q04930 467 aa4.39□□□□□ -1.71
CDC9YDL164C TAL1P15019 335 aaKnown RBP4.38□□□□□ -1.71
CDC9YDL164C PRP6P19735 899 aaPredicted RBP4.38□□□□□ -1.71
CDC9YDL164C GRR1P24814 1151 aa4.38□□□□□ -1.71
CDC9YDL164C YCR015CP25616 317 aa4.38□□□□□ -1.71
CDC9YDL164C IDH2P28241 369 aaKnown RBP4.38□□□□□ -1.71
CDC9YDL164C YME2P32843 850 aa4.38□□□□□ -1.71
CDC9YDL164C PFF1P38244 976 aa4.38□□□□□ -1.71
CDC9YDL164C ZRG8P40021 1076 aa4.38□□□□□ -1.71
CDC9YDL164C KEL2P50090 882 aa4.38□□□□□ -1.71
CDC9YDL164C ASE1P50275 885 aa4.38□□□□□ -1.71
CDC9YDL164C SIZ1Q04195 904 aa4.38□□□□□ -1.71
CDC9YDL164C DCI1Q08558 271 aa4.38□□□□□ -1.71
CDC9YDL164C NDJ1Q12366 352 aa4.38□□□□□ -1.71
CDC9YDL164C MRPL23Q12487 163 aaPredicted RBP4.38□□□□□ -1.71
CDC9YDL164C ADF1Q2V2Q1 113 aa4.38□□□□□ -1.71
CDC9YDL164C STE3P06783 470 aa4.38□□□□□ -1.71
CDC9YDL164C UBA1P22515 1024 aaKnown RBP4.38□□□□□ -1.71
CDC9YDL164C HMX1P32339 317 aa4.38□□□□□ -1.71
CDC9YDL164C REV7P38927 245 aa4.38□□□□□ -1.71
CDC9YDL164C NUP60P39705 539 aa4.38□□□□□ -1.71
CDC9YDL164C BPL1P48445 690 aaPredicted RBP4.38□□□□□ -1.71
CDC9YDL164C INP52P50942 1183 aa4.38□□□□□ -1.71
CDC9YDL164C TWF1P53250 332 aa4.38□□□□□ -1.71
CDC9YDL164C MNT4P53745 580 aa4.38□□□□□ -1.71
CDC9YDL164C RCM1P53972 490 aa4.38□□□□□ -1.71
CDC9YDL164C INA17Q02888 182 aa4.38□□□□□ -1.71
CDC9YDL164C VPS63O13549 108 aa4.37□□□□□ -1.71
CDC9YDL164C MRP13P12686 339 aa4.37□□□□□ -1.71
CDC9YDL164C ASF2P32448 525 aaPredicted RBP4.37□□□□□ -1.71
CDC9YDL164C DCG1P32460 244 aa4.37□□□□□ -1.71
CDC9YDL164C SEC31P38968 1273 aaKnown RBP4.37□□□□□ -1.71
CDC9YDL164C YIL077CP40508 320 aa4.37□□□□□ -1.71
CDC9YDL164C IMD4P50094 524 aaKnown RBP4.37□□□□□ -1.71
CDC9YDL164C YMR265CQ03508 461 aaKnown RBP4.37□□□□□ -1.71
CDC9YDL164C USA1Q03714 838 aa4.37□□□□□ -1.71
CDC9YDL164C ACL4Q03771 387 aa4.37□□□□□ -1.71
CDC9YDL164C ATG38Q05789 226 aaKnown RBP4.37□□□□□ -1.71
CDC9YDL164C GEP3Q08622 556 aa4.37□□□□□ -1.71
CDC9YDL164C ULA1Q12059 462 aa4.37□□□□□ -1.71
CDC9YDL164C POM34Q12445 299 aa4.37□□□□□ -1.71
CDC9YDL164C TDH1P00360 332 aaKnown RBP4.37□□□□□ -1.71
CDC9YDL164C GAL7P08431 366 aa4.37□□□□□ -1.71
CDC9YDL164C RPL3P14126 387 aaKnown RBP4.37□□□□□ -1.71
CDC9YDL164C PRE10P21242 288 aaKnown RBP RIP-Chip data4.37□□□□□ -1.71not detected
CDC9YDL164C DOA4P32571 926 aa4.37□□□□□ -1.71
CDC9YDL164C SRB5P32585 307 aa4.37□□□□□ -1.71
CDC9YDL164C MSN4P33749 630 aa4.37□□□□□ -1.71
CDC9YDL164C CAB3P36076 571 aa4.37□□□□□ -1.71
CDC9YDL164C SIC1P38634 284 aa4.37□□□□□ -1.71
CDC9YDL164C YHL012WP38709 493 aa4.37□□□□□ -1.71
CDC9YDL164C ARO9P38840 513 aaPredicted RBP4.37□□□□□ -1.71
CDC9YDL164C YIL089WP40500 205 aa4.37□□□□□ -1.71
CDC9YDL164C YGL185CP53100 379 aa4.37□□□□□ -1.71
CDC9YDL164C PNC1P53184 216 aaKnown RBP4.37□□□□□ -1.71
CDC9YDL164C TIM21P53220 239 aa4.37□□□□□ -1.71
CDC9YDL164C YGR066CP53242 292 aa4.37□□□□□ -1.71
CDC9YDL164C DSE4P53753 1117 aa4.37□□□□□ -1.71
CDC9YDL164C AQR1P53943 586 aa4.37□□□□□ -1.71
CDC9YDL164C MAK10Q02197 733 aa4.37□□□□□ -1.71
CDC9YDL164C HOF1Q05080 669 aa4.37□□□□□ -1.71
CDC9YDL164C BUG1Q12191 341 aa4.37□□□□□ -1.71
CDC9YDL164C YOR012WQ12351 137 aa4.37□□□□□ -1.71
CDC9YDL164C HIP1P06775 603 aa4.36□□□□□ -1.71
CDC9YDL164C MER1P16523 270 aa4.36□□□□□ -1.71
CDC9YDL164C PRD1P25375 712 aa4.36□□□□□ -1.71
CDC9YDL164C LRE1P25579 583 aaKnown RBP4.36□□□□□ -1.71
CDC9YDL164C LIN1P38852 340 aaPredicted RBP4.36□□□□□ -1.71
CDC9YDL164C PEX7P39108 375 aa4.36□□□□□ -1.71
CDC9YDL164C URM1P40554 99 aaPredicted RBP4.36□□□□□ -1.71
CDC9YDL164C TEX1P53851 422 aaKnown RBP4.36□□□□□ -1.71
CDC9YDL164C SMA1Q02651 245 aa4.36□□□□□ -1.71
CDC9YDL164C YDR179W-AQ03983 463 aa4.36□□□□□ -1.71
Retrieved 100 of 5,963 RNA–protein pairs in 27.1 ms