RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SLC25A27O95847 323 aa25.32■■□□□ 1.64
VPS53-216ENST00000574029 FCER1AP12319 257 aa25.32■■□□□ 1.64
VPS53-216ENST00000574029 Q7L0L9 218 aa25.32■■□□□ 1.64
VPS53-216ENST00000574029 LTBP2Q14767 1821 aa25.32■■□□□ 1.64
VPS53-216ENST00000574029 SMARCA5O60264 1052 aaPredicted RBP25.31■■□□□ 1.64
VPS53-216ENST00000574029 RTP1P59025 263 aa25.31■■□□□ 1.64
VPS53-216ENST00000574029 PRAMEF19Q5SWL8 479 aa25.31■■□□□ 1.64
VPS53-216ENST00000574029 C20orf194Q5TEA3 1177 aa25.31■■□□□ 1.64
VPS53-216ENST00000574029 ANO1Q5XXA6 986 aa25.31■■□□□ 1.64
VPS53-216ENST00000574029 ARPP21Q9UBL0 812 aaPredicted RBP25.31■■□□□ 1.64
VPS53-216ENST00000574029 SAMD1Q6SPF0 538 aaPredicted RBP25.3■■□□□ 1.64
VPS53-216ENST00000574029 SLC39A5Q6ZMH5 540 aa25.3■■□□□ 1.64
VPS53-216ENST00000574029 RIOX2Q8IUF8 465 aa25.3■■□□□ 1.64
VPS53-216ENST00000574029 LBHD1Q9BQE6 289 aaPredicted RBP25.3■■□□□ 1.64
VPS53-216ENST00000574029 GNL3Q9BVP2 549 aaKnown RBP eCLIP25.3■■□□□ 1.64
VPS53-216ENST00000574029 GOPCQ9HD26 462 aa25.3■■□□□ 1.64
VPS53-216ENST00000574029 ECHDC1Q9NTX5 307 aa25.3■■□□□ 1.64
VPS53-216ENST00000574029 FBXO28Q9NVF7 368 aa25.3■■□□□ 1.64
VPS53-216ENST00000574029 MTMR10Q9NXD2 777 aa25.3■■□□□ 1.64
VPS53-216ENST00000574029 PLXNA1Q9UIW2 1896 aa25.3■■□□□ 1.64
VPS53-216ENST00000574029 KBTBD13C9JR72 458 aa25.29■■□□□ 1.64
VPS53-216ENST00000574029 SBK1Q52WX2 424 aa25.29■■□□□ 1.64
VPS53-216ENST00000574029 STRBPQ96SI9 672 aaKnown RBP25.29■■□□□ 1.64
VPS53-216ENST00000574029 PPP1R9AQ9ULJ8 1098 aa25.29■■□□□ 1.64
VPS53-216ENST00000574029 VWA5AO00534 786 aa25.28■■□□□ 1.64
VPS53-216ENST00000574029 SNX17Q15036 470 aa25.28■■□□□ 1.64
VPS53-216ENST00000574029 REPS2Q8NFH8 660 aa25.28■■□□□ 1.64
VPS53-216ENST00000574029 MMP19Q99542 508 aa25.28■■□□□ 1.64
VPS53-216ENST00000574029 PRKAG2Q9UGJ0 569 aa25.28■■□□□ 1.64
VPS53-216ENST00000574029 NRBP1Q9UHY1 535 aa25.28■■□□□ 1.64
VPS53-216ENST00000574029 STXBP5LQ9Y2K9 1186 aa25.28■■□□□ 1.64
VPS53-216ENST00000574029 STAT3P40763 770 aa25.27■■□□□ 1.64
VPS53-216ENST00000574029 FAM83BQ5T0W9 1011 aa25.27■■□□□ 1.64
VPS53-216ENST00000574029 ZNF214Q9UL59 606 aaPredicted RBP25.27■■□□□ 1.64
VPS53-216ENST00000574029 ATP11BQ9Y2G3 1177 aa25.27■■□□□ 1.64
VPS53-216ENST00000574029 DIS3Q9Y2L1 958 aaKnown RBP25.27■■□□□ 1.64
VPS53-216ENST00000574029 GSG1L2A8MUP6 293 aa25.26■■□□□ 1.63
VPS53-216ENST00000574029 LRRC41Q15345 812 aa25.26■■□□□ 1.63
VPS53-216ENST00000574029 ZNF792Q3KQV3 632 aa25.26■■□□□ 1.63
VPS53-216ENST00000574029 GIMAP6Q6P9H5 292 aa25.26■■□□□ 1.63
VPS53-216ENST00000574029 KBTBD3Q8NAB2 608 aa25.26■■□□□ 1.63
VPS53-216ENST00000574029 COL6A3P12111 3177 aa25.26■■□□□ 1.63
VPS53-216ENST00000574029 DNAH12Q6ZR08 3092 aa25.26■■□□□ 1.63
VPS53-216ENST00000574029 PGK2P07205 417 aa25.25■■□□□ 1.63
VPS53-216ENST00000574029 RASA1P20936 1047 aa25.25■■□□□ 1.63
VPS53-216ENST00000574029 COPB2P35606 906 aa25.25■■□□□ 1.63
VPS53-216ENST00000574029 KCTD2Q14681 263 aa25.25■■□□□ 1.63
VPS53-216ENST00000574029 FAM47AQ5JRC9 791 aa25.25■■□□□ 1.63
VPS53-216ENST00000574029 ROBO3Q96MS0 1386 aa25.25■■□□□ 1.63
VPS53-216ENST00000574029 ADCYAP1R1P41586 468 aa25.24■■□□□ 1.63
VPS53-216ENST00000574029 C1orf53Q5VUE5 145 aa25.24■■□□□ 1.63
VPS53-216ENST00000574029 APPBP2Q92624 585 aa25.24■■□□□ 1.63
VPS53-216ENST00000574029 OSBP2Q969R2 916 aa25.24■■□□□ 1.63
VPS53-216ENST00000574029 TINF2Q9BSI4 451 aa25.24■■□□□ 1.63
VPS53-216ENST00000574029 DCTPP1Q9H773 170 aa25.24■■□□□ 1.63
VPS53-216ENST00000574029 NYAP2Q9P242 653 aa25.24■■□□□ 1.63
VPS53-216ENST00000574029 SMCHD1A6NHR9 2005 aa25.24■■□□□ 1.63
VPS53-216ENST00000574029 POTEB2H3BUK9 544 aa25.23■■□□□ 1.63
VPS53-216ENST00000574029 DLL1O00548 723 aa25.23■■□□□ 1.63
VPS53-216ENST00000574029 RAD21O60216 631 aa25.23■■□□□ 1.63
VPS53-216ENST00000574029 MYCNP04198 464 aaPredicted RBP25.23■■□□□ 1.63
VPS53-216ENST00000574029 TRIM60Q495X7 471 aa25.23■■□□□ 1.63
VPS53-216ENST00000574029 FAM109BQ6ICB4 259 aaPredicted RBP25.23■■□□□ 1.63
VPS53-216ENST00000574029 SLF1Q9BQI6 1058 aa25.22■■□□□ 1.63
VPS53-216ENST00000574029 MKNK2Q9HBH9 465 aa25.22■■□□□ 1.63
VPS53-216ENST00000574029 XPNPEP3Q9NQH7 507 aa25.22■■□□□ 1.63
VPS53-216ENST00000574029 PHF24Q9UPV7 400 aa25.22■■□□□ 1.63
VPS53-216ENST00000574029 MINDY4BA8MYZ0 360 aa25.21■■□□□ 1.63
VPS53-216ENST00000574029 F5H6K3 240 aa25.21■■□□□ 1.63
VPS53-216ENST00000574029 RNF113AO15541 343 aaKnown RBP25.21■■□□□ 1.63
VPS53-216ENST00000574029 RARBP10826 455 aa25.21■■□□□ 1.63
VPS53-216ENST00000574029 KLRC3Q07444 240 aa25.21■■□□□ 1.63
VPS53-216ENST00000574029 STK11IPQ8N1F8 1099 aa25.21■■□□□ 1.63
VPS53-216ENST00000574029 FERMT2Q96AC1 680 aa25.21■■□□□ 1.63
VPS53-216ENST00000574029 GPATCH3Q96I76 525 aa25.21■■□□□ 1.63
VPS53-216ENST00000574029 NUP88Q99567 741 aaPredicted RBP25.21■■□□□ 1.63
VPS53-216ENST00000574029 MYH4Q9Y623 1939 aa25.21■■□□□ 1.63
VPS53-216ENST00000574029 IGKV6D-41A0A0C4DH26 115 aa25.2■■□□□ 1.62
VPS53-216ENST00000574029 ZFYP08048 801 aaPredicted RBP25.2■■□□□ 1.62
VPS53-216ENST00000574029 ZNF865P0CJ78 1059 aaPredicted RBP25.2■■□□□ 1.62
VPS53-216ENST00000574029 TAL1P17542 331 aaPredicted RBP25.2■■□□□ 1.62
VPS53-216ENST00000574029 TEX13BQ9BXU2 312 aa25.2■■□□□ 1.62
VPS53-216ENST00000574029 EPB41L4AQ9HCS5 686 aaPredicted RBP25.2■■□□□ 1.62
VPS53-216ENST00000574029 PRDM5Q9NQX1 630 aaPredicted RBP25.2■■□□□ 1.62
VPS53-216ENST00000574029 PDLIM7Q9NR12 457 aa25.2■■□□□ 1.62
VPS53-216ENST00000574029 GPAA1O43292 621 aa25.19■■□□□ 1.62
VPS53-216ENST00000574029 NDUFB10O96000 172 aa25.19■■□□□ 1.62
VPS53-216ENST00000574029 GNAT2P19087 354 aa25.19■■□□□ 1.62
VPS53-216ENST00000574029 TSHZ3Q63HK5 1081 aa25.19■■□□□ 1.62
VPS53-216ENST00000574029 PRPF38AQ8NAV1 312 aaKnown RBP25.19■■□□□ 1.62
VPS53-216ENST00000574029 SHHQ15465 462 aa25.18■■□□□ 1.62
VPS53-216ENST00000574029 SH3RF1Q7Z6J0 888 aa25.18■■□□□ 1.62
VPS53-216ENST00000574029 RNF180Q86T96 592 aa25.18■■□□□ 1.62
VPS53-216ENST00000574029 MSL3Q8N5Y2 521 aaKnown RBP25.18■■□□□ 1.62
VPS53-216ENST00000574029 BADQ92934 168 aa25.18■■□□□ 1.62
VPS53-216ENST00000574029 MKL1Q969V6 931 aa25.18■■□□□ 1.62
VPS53-216ENST00000574029 RIPK3Q9Y572 518 aa25.18■■□□□ 1.62
VPS53-216ENST00000574029 TRIM43BA6NCK2 446 aa25.17■■□□□ 1.62
VPS53-216ENST00000574029 M0R2C6 588 aa25.17■■□□□ 1.62
VPS53-216ENST00000574029 ATP2A1O14983 1001 aa25.17■■□□□ 1.62
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms