RNA–Protein interactions for RNA: ENST00000573166.5

SMG6-213, Transcript of SMG6, nonsense mediated mRNA decay factor, human

TSL 1 (best)

Gene SMG6, Length 4,236 nt, Biotype processed transcript, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMG6-213	ENST00000573166	IL25	Q9H293	177 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	CPVL	Q9H3G5	476 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	KCP	Q6ZWJ8	1503 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	SMTNL1	A8MU46	457 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	DDX39A	O00148	427 aa	Known RBP	11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	LARGE1	O95461	756 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	KCTD2	Q14681	263 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	DACT2	Q5SW24	774 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	STOX1	Q6ZVD7	989 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	FAM160B2	Q86V87	743 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	NOSTRIN	Q8IVI9	506 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	SLC5A4	Q9NY91	659 aa		11.46	□□□□□ -0.58
SMG6-213	ENST00000573166	TESPA1	A2RU30	521 aa	Predicted RBP	11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	ASIC1	P78348	528 aa		11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	KIF22	Q14807	665 aa		11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	FAM83B	Q5T0W9	1011 aa		11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	ARHGEF16	Q5VV41	709 aa		11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	MYSM1	Q5VVJ2	828 aa		11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	NLGN2	Q8NFZ4	835 aa		11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	ADARB2	Q9NS39	739 aa	Known RBP	11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	NOP56	O00567	594 aa	Known RBP	11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	PLEKHA8P1	O95397	391 aa		11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	TSG101	Q99816	390 aa		11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	EPHX2	P34913	555 aa		11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	IQUB	Q8NA54	791 aa		11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	NUP88	Q99567	741 aa	Predicted RBP	11.45	□□□□□ -0.58
SMG6-213	ENST00000573166	SALL3	Q9BXA9	1300 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166		A0A1B0GVL5	298 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	FMNL1	O95466	1100 aa	Predicted RBP	11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	VEGFA	P15692	232 aa	Predicted RBP	11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	CALCRL	Q16602	461 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	KLHL40	Q2TBA0	621 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	BRDT	Q58F21	947 aa	Predicted RBP	11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	STXBP4	Q6ZWJ1	553 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	CLEC10A	Q8IUN9	316 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	SYCP3	Q8IZU3	236 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	RIOK1	Q9BRS2	568 aa	Known RBP	11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	RTFDC1	Q9BY42	306 aa	Predicted RBP	11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	EXOC1	Q9NV70	894 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	CCT6A	P40227	531 aa	Known RBP	11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	SNAP25	P60880	206 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	TOB2	Q14106	344 aa	Predicted RBP	11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	GALNT17	Q6IS24	598 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	MTA3	Q9BTC8	594 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	LY9	Q9HBG7	655 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	CDC37	Q16543	378 aa	Predicted RBP	11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	MCTP2	Q6DN12	878 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	ELP3	Q9H9T3	547 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	LRWD1	Q9UFC0	647 aa		11.44	□□□□□ -0.58
SMG6-213	ENST00000573166	GNPTAB	Q3T906	1256 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	NCAPH2	Q6IBW4	605 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	DPP9	Q86TI2	863 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	RASGRP4	Q8TDF6	673 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	PNMA3	Q9UL41	463 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	MTMR6	Q9Y217	621 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	NEMF	O60524	1076 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	BRD1	O95696	1058 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	FOS	P01100	380 aa	Predicted RBP	11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	HMGCS2	P54868	508 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	TSGA10IP	Q3SY00	556 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	PRR16	Q569H4	304 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	SPECC1	Q5M775	1068 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	ADGRA1	Q86SQ6	560 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	NLRX1	Q86UT6	975 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	DCAF4	Q8WV16	495 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	AIFM3	Q96NN9	605 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	PDS5A	Q29RF7	1337 aa	Known RBP	11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	C15orf52	Q6ZUT6	534 aa	Known RBP	11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	C16orf86	Q6ZW13	317 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	TMTC3	Q6ZXV5	915 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	NEK8	Q86SG6	692 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	GPC2	Q8N158	579 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	MTMR4	Q9NYA4	1195 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	SALL1	Q9NSC2	1324 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	PRPF3	O43395	683 aa	Known RBP	11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	RASA1	P20936	1047 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	HAUS3	Q68CZ6	603 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	RCSD1	Q6JBY9	416 aa		11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	CCDC84	Q86UT8	332 aa	Predicted RBP	11.43	□□□□□ -0.58
SMG6-213	ENST00000573166	WDR19	Q8NEZ3	1342 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	CUL4A	Q13619	759 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	SPC24	Q8NBT2	197 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	PNMA6F	A0A0J9YX94	578 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	UBXN2A	P68543	259 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	LEO1	Q8WVC0	666 aa	Predicted RBP	11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	DPF2	Q92785	391 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	HOXC10	Q9NYD6	342 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	CACNA1F	O60840	1977 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	WNT10B	O00744	389 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	GAS7	O60861	476 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	MAP3K9	P80192	1104 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	PKP1	Q13835	747 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	GAS2L3	Q86XJ1	694 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	SNX29	Q8TEQ0	813 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	BICD1	Q96G01	975 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	RMND1	Q9NWS8	449 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	RIC1	Q4ADV7	1423 aa		11.42	□□□□□ -0.58
SMG6-213	ENST00000573166	MMP14	P50281	582 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	PPFIBP1	Q86W92	1011 aa		11.41	□□□□□ -0.58
SMG6-213	ENST00000573166	SLF1	Q9BQI6	1058 aa		11.41	□□□□□ -0.58

Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms