RNA–Protein interactions for RNA: ENST00000570546.5

CIITA-204, Transcript of class II major histocompatibility complex transactivator, humanhuman

TSL 2

Gene CIITA, Length 5,342 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-204ENST00000570546 GNA14O95837 355 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 CCDC6Q16204 474 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 TRIM31Q9BZY9 425 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 HAUS4Q9H6D7 363 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 ZDHHC9Q9Y397 364 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 ADGRB3O60242 1522 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 CASP14P31944 242 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 NT5C3AQ9H0P0 336 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 MKRN1Q9UHC7 482 aaKnown RBP17.04■□□□□ 0.32
CIITA-204ENST00000570546 PHLPP2Q6ZVD8 1323 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 OR52Z1P0C646 297 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 FAM212AQ96EL1 285 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 GSDMAQ96QA5 445 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 SWAP70Q9UH65 585 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 MAN1B1Q9UKM7 699 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 SBDSQ9Y3A5 250 aaKnown RBP eCLIP17.04■□□□□ 0.32
CIITA-204ENST00000570546 ALKQ9UM73 1620 aa17.04■□□□□ 0.32
CIITA-204ENST00000570546 POLR1AO95602 1720 aaPredicted RBP17.04■□□□□ 0.32
CIITA-204ENST00000570546 INPP5BP32019 993 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 SYCE1Q8N0S2 351 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 VIMP08670 466 aaKnown RBP17.03■□□□□ 0.32
CIITA-204ENST00000570546 ZSCAN26Q16670 478 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 PTPN21Q16825 1174 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 RUFY4Q6ZNE9 571 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 POTEDQ86YR6 584 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 LRRIQ1Q96JM4 1722 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 GCNT3O95395 438 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 ATP5DP30049 168 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 GALNT17Q6IS24 598 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 RNF26Q9BY78 433 aaPredicted RBP17.03■□□□□ 0.32
CIITA-204ENST00000570546 MRPL44Q9H9J2 332 aaKnown RBP17.03■□□□□ 0.32
CIITA-204ENST00000570546 ARHGEF35A5YM69 484 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 SH2D4AQ9H788 454 aa17.03■□□□□ 0.32
CIITA-204ENST00000570546 KDM3AQ9Y4C1 1321 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 PCP11498 1178 aaKnown RBP17.02■□□□□ 0.32
CIITA-204ENST00000570546 PI16Q6UXB8 463 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 MYCT1Q8N699 235 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 TSNARE1Q96NA8 513 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 HYOU1Q9Y4L1 999 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 COBLO75128 1261 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 MMP1P03956 469 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 RBL2Q08999 1139 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 PEX26Q7Z412 305 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 MYOCDQ8IZQ8 938 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 RABGGTAQ92696 567 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 ARHGEF10LQ9HCE6 1279 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 DAAM2Q86T65 1068 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 SLAIN2Q9P270 581 aa17.02■□□□□ 0.32
CIITA-204ENST00000570546 EPN1Q9Y6I3 576 aaPredicted RBP17.02■□□□□ 0.32
CIITA-204ENST00000570546 MXRA7P84157 204 aa17.02■□□□□ 0.31
CIITA-204ENST00000570546 WDR44Q5JSH3 913 aa17.02■□□□□ 0.31
CIITA-204ENST00000570546 NEK8Q86SG6 692 aa17.02■□□□□ 0.31
CIITA-204ENST00000570546 CTTNBP2NLQ9P2B4 639 aa17.02■□□□□ 0.31
CIITA-204ENST00000570546 USH1GQ495M9 461 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 NKIRAS1Q9NYS0 192 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 ZBTB16Q05516 673 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 GRAMD1CQ8IYS0 662 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 CEP83Q9Y592 693 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 CCDC169A6NNP5 214 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 SP4Q02446 784 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 SETDB1Q15047 1291 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 RBM26Q5T8P6 1007 aaKnown RBP17.01■□□□□ 0.31
CIITA-204ENST00000570546 SRGAP1Q7Z6B7 1085 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 CDC23Q9UJX2 597 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 SMTNP53814 917 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 PPM1EQ8WY54 764 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 PLEKHA4Q9H4M7 779 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 SPTLC3Q9NUV7 552 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 ERBB3P21860 1342 aa17.01■□□□□ 0.31
CIITA-204ENST00000570546 SEC31AO94979 1220 aaKnown RBP17■□□□□ 0.31
CIITA-204ENST00000570546 GOLGA8HP0CJ92 632 aa17■□□□□ 0.31
CIITA-204ENST00000570546 ATP8A2Q9NTI2 1148 aa17■□□□□ 0.31
CIITA-204ENST00000570546 ANKARQ7Z5J8 1434 aa17■□□□□ 0.31
CIITA-204ENST00000570546 KLRF2D3W0D1 207 aa17■□□□□ 0.31
CIITA-204ENST00000570546 DMTNQ08495 405 aa17■□□□□ 0.31
CIITA-204ENST00000570546 MTMR3Q13615 1198 aa17■□□□□ 0.31
CIITA-204ENST00000570546 GPBP1Q86WP2 473 aa17■□□□□ 0.31
CIITA-204ENST00000570546 ASAP1Q9ULH1 1129 aa17■□□□□ 0.31
CIITA-204ENST00000570546 BACH1O14867 736 aa17■□□□□ 0.31
CIITA-204ENST00000570546 BIRC3Q13489 604 aa17■□□□□ 0.31
CIITA-204ENST00000570546 VSTM4Q8IW00 320 aa17■□□□□ 0.31
CIITA-204ENST00000570546 TBC1D22AQ8WUA7 517 aa17■□□□□ 0.31
CIITA-204ENST00000570546 FNBP1Q96RU3 617 aa17■□□□□ 0.31
CIITA-204ENST00000570546 TULP4Q9NRJ4 1543 aa17■□□□□ 0.31
CIITA-204ENST00000570546 FRMPD2Q68DX3 1309 aaPredicted RBP17■□□□□ 0.31
CIITA-204ENST00000570546 CDC42BPGQ6DT37 1551 aa17■□□□□ 0.31
CIITA-204ENST00000570546 SLC35F6Q8N357 371 aa17■□□□□ 0.31
CIITA-204ENST00000570546 ATP2A2P16615 1042 aaKnown RBP17■□□□□ 0.31
CIITA-204ENST00000570546 DPH6Q7L8W6 267 aa17■□□□□ 0.31
CIITA-204ENST00000570546 SMYD4Q8IYR2 804 aaPredicted RBP17■□□□□ 0.31
CIITA-204ENST00000570546 DDX41Q9UJV9 622 aaKnown RBP17■□□□□ 0.31
CIITA-204ENST00000570546 EXOC7Q9UPT5 735 aa17■□□□□ 0.31
CIITA-204ENST00000570546 NCAPD2Q15021 1401 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 ATP10DQ9P241 1426 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 UBAP1LF5GYI3 381 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 MAEAQ7L5Y9 396 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 SLC39A2Q9NP94 309 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 HEG1Q9ULI3 1381 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 EXOC3O60645 756 aa16.99■□□□□ 0.31
CIITA-204ENST00000570546 TRAPPC10P48553 1259 aa16.99■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms