RNA–Protein interactions for RNA: ENST00000548945.6

PTCH1-218, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 243 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-218ENST00000548945 KBTBD13C9JR72 458 aa15.45■□□□□ 0.06
PTCH1-218ENST00000548945 COPB2P35606 906 aa15.45■□□□□ 0.06
PTCH1-218ENST00000548945 RTP1P59025 263 aa15.45■□□□□ 0.06
PTCH1-218ENST00000548945 SLFNL1Q499Z3 407 aa15.45■□□□□ 0.06
PTCH1-218ENST00000548945 CLEC10AQ8IUN9 316 aa15.45■□□□□ 0.06
PTCH1-218ENST00000548945 MAML3Q96JK9 1138 aa15.45■□□□□ 0.06
PTCH1-218ENST00000548945 LRRCC1Q9C099 1032 aa15.45■□□□□ 0.06
PTCH1-218ENST00000548945 GOPCQ9HD26 462 aa15.45■□□□□ 0.06
PTCH1-218ENST00000548945 SLC4A4Q9Y6R1 1079 aa15.45■□□□□ 0.06
PTCH1-218ENST00000548945 CYP2D7A0A087X1C5 515 aa15.44■□□□□ 0.06
PTCH1-218ENST00000548945 EEF2P13639 858 aaKnown RBP15.44■□□□□ 0.06
PTCH1-218ENST00000548945 ATN1P54259 1190 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-218ENST00000548945 TMEM132BQ14DG7 1078 aa15.44■□□□□ 0.06
PTCH1-218ENST00000548945 SNX17Q15036 470 aa15.44■□□□□ 0.06
PTCH1-218ENST00000548945 GJC2Q5T442 439 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-218ENST00000548945 C1orf53Q5VUE5 145 aa15.44■□□□□ 0.06
PTCH1-218ENST00000548945 FAM109BQ6ICB4 259 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-218ENST00000548945 GIMAP6Q6P9H5 292 aa15.44■□□□□ 0.06
PTCH1-218ENST00000548945 CTR9Q6PD62 1173 aa15.44■□□□□ 0.06
PTCH1-218ENST00000548945 RIOX2Q8IUF8 465 aa15.44■□□□□ 0.06
PTCH1-218ENST00000548945 ARPP21Q9UBL0 812 aaPredicted RBP15.44■□□□□ 0.06
PTCH1-218ENST00000548945 DIS3Q9Y2L1 958 aaKnown RBP15.44■□□□□ 0.06
PTCH1-218ENST00000548945 MYH4Q9Y623 1939 aa15.43■□□□□ 0.06
PTCH1-218ENST00000548945 VWA5AO00534 786 aa15.43■□□□□ 0.06
PTCH1-218ENST00000548945 SBK1Q52WX2 424 aa15.43■□□□□ 0.06
PTCH1-218ENST00000548945 SLC39A5Q6ZMH5 540 aa15.43■□□□□ 0.06
PTCH1-218ENST00000548945 Q7L0L9 218 aa15.43■□□□□ 0.06
PTCH1-218ENST00000548945 PUS7LQ9H0K6 701 aaKnown RBP15.43■□□□□ 0.06
PTCH1-218ENST00000548945 BCL11AQ9H165 835 aa15.43■□□□□ 0.06
PTCH1-218ENST00000548945 RCAN3Q9UKA8 241 aa15.43■□□□□ 0.06
PTCH1-218ENST00000548945 PPP1R9AQ9ULJ8 1098 aa15.43■□□□□ 0.06
PTCH1-218ENST00000548945 ROBO3Q96MS0 1386 aa15.43■□□□□ 0.06
PTCH1-218ENST00000548945 POTEB2H3BUK9 544 aa15.42■□□□□ 0.06
PTCH1-218ENST00000548945 SMIM22K7EJ46 135 aa15.42■□□□□ 0.06
PTCH1-218ENST00000548945 STAT3P40763 770 aa15.42■□□□□ 0.06
PTCH1-218ENST00000548945 LRRC41Q15345 812 aa15.42■□□□□ 0.06
PTCH1-218ENST00000548945 MMP19Q99542 508 aa15.42■□□□□ 0.06
PTCH1-218ENST00000548945 ECHDC1Q9NTX5 307 aa15.42■□□□□ 0.06
PTCH1-218ENST00000548945 ZNF214Q9UL59 606 aaPredicted RBP15.42■□□□□ 0.06
PTCH1-218ENST00000548945 DLL1O00548 723 aa15.41■□□□□ 0.06
PTCH1-218ENST00000548945 CHGBP05060 677 aa15.41■□□□□ 0.06
PTCH1-218ENST00000548945 KCTD2Q14681 263 aa15.41■□□□□ 0.06
PTCH1-218ENST00000548945 REPS2Q8NFH8 660 aa15.41■□□□□ 0.06
PTCH1-218ENST00000548945 STRBPQ96SI9 672 aaKnown RBP15.41■□□□□ 0.06
PTCH1-218ENST00000548945 TINF2Q9BSI4 451 aa15.41■□□□□ 0.06
PTCH1-218ENST00000548945 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.41■□□□□ 0.06
PTCH1-218ENST00000548945 FBXO28Q9NVF7 368 aa15.41■□□□□ 0.06
PTCH1-218ENST00000548945 ATP11BQ9Y2G3 1177 aa15.41■□□□□ 0.06
PTCH1-218ENST00000548945 RARBP10826 455 aa15.4■□□□□ 0.06
PTCH1-218ENST00000548945 ZNF792Q3KQV3 632 aa15.4■□□□□ 0.06
PTCH1-218ENST00000548945 FAM47AQ5JRC9 791 aa15.4■□□□□ 0.06
PTCH1-218ENST00000548945 PRAMEF19Q5SWL8 479 aa15.4■□□□□ 0.06
PTCH1-218ENST00000548945 FAM83BQ5T0W9 1011 aa15.4■□□□□ 0.06
PTCH1-218ENST00000548945 ANO1Q5XXA6 986 aa15.4■□□□□ 0.06
PTCH1-218ENST00000548945 SAMD1Q6SPF0 538 aaPredicted RBP15.4■□□□□ 0.06
PTCH1-218ENST00000548945 MSL3Q8N5Y2 521 aaKnown RBP15.4■□□□□ 0.06
PTCH1-218ENST00000548945 KBTBD3Q8NAB2 608 aa15.4■□□□□ 0.06
PTCH1-218ENST00000548945 GPATCH3Q96I76 525 aa15.4■□□□□ 0.06
PTCH1-218ENST00000548945 NYAP2Q9P242 653 aa15.4■□□□□ 0.06
PTCH1-218ENST00000548945 PHF24Q9UPV7 400 aa15.4■□□□□ 0.06
PTCH1-218ENST00000548945 GSG1L2A8MUP6 293 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 RASA1P20936 1047 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 ADCYAP1R1P41586 468 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 TRIM60Q495X7 471 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 RNF180Q86T96 592 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 TEX13BQ9BXU2 312 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 MKNK2Q9HBH9 465 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 XPNPEP3Q9NQH7 507 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 PDLIM7Q9NR12 457 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 SYNPO2Q9UMS6 1093 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 PRUNE2Q8WUY3 3088 aa15.39■□□□□ 0.05
PTCH1-218ENST00000548945 EYSQ5T1H1 3165 aa15.38■□□□□ 0.05
PTCH1-218ENST00000548945 ATP2A1O14983 1001 aa15.38■□□□□ 0.05
PTCH1-218ENST00000548945 SMARCA5O60264 1052 aaPredicted RBP15.38■□□□□ 0.05
PTCH1-218ENST00000548945 PGK2P07205 417 aa15.38■□□□□ 0.05
PTCH1-218ENST00000548945 ZFYP08048 801 aaPredicted RBP15.38■□□□□ 0.05
PTCH1-218ENST00000548945 AKR1A1P14550 325 aa15.38■□□□□ 0.05
PTCH1-218ENST00000548945 GNAT2P19087 354 aa15.38■□□□□ 0.05
PTCH1-218ENST00000548945 DHX30Q7L2E3 1194 aaKnown RBP eCLIP15.38■□□□□ 0.05
PTCH1-218ENST00000548945 PRPF38AQ8NAV1 312 aaKnown RBP15.38■□□□□ 0.05
PTCH1-218ENST00000548945 APPBP2Q92624 585 aa15.38■□□□□ 0.05
PTCH1-218ENST00000548945 SLF1Q9BQI6 1058 aa15.38■□□□□ 0.05
PTCH1-218ENST00000548945 DCTPP1Q9H773 170 aa15.38■□□□□ 0.05
PTCH1-218ENST00000548945 ZNF287Q9HBT7 754 aa15.38■□□□□ 0.05
PTCH1-218ENST00000548945 MCM3APO60318 1980 aa15.38■□□□□ 0.05
PTCH1-218ENST00000548945 F5H6K3 240 aa15.37■□□□□ 0.05
PTCH1-218ENST00000548945 RAD21O60216 631 aa15.37■□□□□ 0.05
PTCH1-218ENST00000548945 MYCNP04198 464 aaPredicted RBP15.37■□□□□ 0.05
PTCH1-218ENST00000548945 ZNF865P0CJ78 1059 aaPredicted RBP15.37■□□□□ 0.05
PTCH1-218ENST00000548945 KLRC3Q07444 240 aa15.37■□□□□ 0.05
PTCH1-218ENST00000548945 LRRFIP1Q32MZ4 808 aaKnown RBP15.37■□□□□ 0.05
PTCH1-218ENST00000548945 OSBP2Q969R2 916 aa15.37■□□□□ 0.05
PTCH1-218ENST00000548945 PRDM5Q9NQX1 630 aaPredicted RBP15.37■□□□□ 0.05
PTCH1-218ENST00000548945 CNPY2Q9Y2B0 182 aa15.37■□□□□ 0.05
PTCH1-218ENST00000548945 TACC3Q9Y6A5 838 aa15.37■□□□□ 0.05
PTCH1-218ENST00000548945 SYNGAP1Q96PV0 1343 aa15.37■□□□□ 0.05
PTCH1-218ENST00000548945 IGKV6D-41A0A0C4DH26 115 aa15.36■□□□□ 0.05
PTCH1-218ENST00000548945 RNF113AO15541 343 aaKnown RBP15.36■□□□□ 0.05
PTCH1-218ENST00000548945 NDUFB10O96000 172 aa15.36■□□□□ 0.05
PTCH1-218ENST00000548945 TLE2Q04725 743 aa15.36■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 23.2 ms