RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 NOLC1Q14978 699 aaKnown RBP eCLIP16.44■□□□□ 0.22
VPS33A-209ENST00000544349 TATDN1Q6P1N9 297 aa16.44■□□□□ 0.22
VPS33A-209ENST00000544349 FSIP1Q8NA03 581 aa16.44■□□□□ 0.22
VPS33A-209ENST00000544349 NLGN2Q8NFZ4 835 aa16.44■□□□□ 0.22
VPS33A-209ENST00000544349 KCNG4Q8TDN1 519 aa16.44■□□□□ 0.22
VPS33A-209ENST00000544349 ERCC4Q92889 916 aaPredicted RBP16.44■□□□□ 0.22
VPS33A-209ENST00000544349 ARFGEF1Q9Y6D6 1849 aa16.44■□□□□ 0.22
VPS33A-209ENST00000544349 MPHOSPH10O00566 681 aaKnown RBP16.43■□□□□ 0.22
VPS33A-209ENST00000544349 CYTH3O43739 400 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 PARP1P09874 1014 aaKnown RBP16.43■□□□□ 0.22
VPS33A-209ENST00000544349 PTGS1P23219 599 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 NR5A1Q13285 461 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 SLC35G1Q2M3R5 365 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 OXER1Q8TDS5 423 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 TRIM34Q9BYJ4 488 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 PCDHA7Q9UN72 937 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 CLRN2A0PK11 232 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 TCP10L2B9ZVM9 353 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 KLRF2D3W0D1 207 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 SPTLC2O15270 562 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 GOLGA8HP0CJ92 632 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 VEGFAP15692 232 aaPredicted RBP16.43■□□□□ 0.22
VPS33A-209ENST00000544349 TNIP1Q15025 636 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 SF3A1Q15459 793 aaKnown RBP16.43■□□□□ 0.22
VPS33A-209ENST00000544349 SPDYE2Q495Y8 402 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 CERKLQ49MI3 558 aaPredicted RBP16.43■□□□□ 0.22
VPS33A-209ENST00000544349 USP17L2Q6R6M4 530 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 CCDC73Q6ZRK6 1079 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 RASGRP2Q7LDG7 609 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 PLA2G4DQ86XP0 818 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 CLEC10AQ8IUN9 316 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 CLIP2Q9UDT6 1046 aa16.43■□□□□ 0.22
VPS33A-209ENST00000544349 PDHBP11177 359 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 KRT2P35908 639 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 ZNF75DP51815 510 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 EIF6P56537 245 aaKnown RBP16.42■□□□□ 0.22
VPS33A-209ENST00000544349 RASSF7Q02833 373 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 FAM160A1Q05DH4 1040 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 SLC39A14Q15043 492 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 ZBED3Q96IU2 234 aaPredicted RBP16.42■□□□□ 0.22
VPS33A-209ENST00000544349 SPZ1Q9BXG8 430 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 SPTLC3Q9NUV7 552 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 MYH4Q9Y623 1939 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 USP17L5A8MUK1 530 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 SMARCA1P28370 1054 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 IQCB1Q15051 598 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 NPY5RQ15761 445 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 PPP4R3BQ5MIZ7 849 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 ADALQ6DHV7 355 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 LRRC47Q8N1G4 583 aaKnown RBP16.42■□□□□ 0.22
VPS33A-209ENST00000544349 FAM151AQ8WW52 585 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 NRBP1Q9UHY1 535 aa16.42■□□□□ 0.22
VPS33A-209ENST00000544349 GOLGB1Q14789 3259 aaKnown RBP16.41■□□□□ 0.22
VPS33A-209ENST00000544349 SNHG28P0DPA3 235 aa16.41■□□□□ 0.22
VPS33A-209ENST00000544349 TOB1P50616 345 aaPredicted RBP16.41■□□□□ 0.22
VPS33A-209ENST00000544349 PRELPP51888 382 aa16.41■□□□□ 0.22
VPS33A-209ENST00000544349 PTPAQ15257 358 aa16.41■□□□□ 0.22
VPS33A-209ENST00000544349 RILPL1Q5EBL4 403 aa16.41■□□□□ 0.22
VPS33A-209ENST00000544349 FKBP1CQ5VVH2 108 aa16.41■□□□□ 0.22
VPS33A-209ENST00000544349 KIAA1524Q8TCG1 905 aa16.41■□□□□ 0.22
VPS33A-209ENST00000544349 CSRNP1Q96S65 589 aa16.41■□□□□ 0.22
VPS33A-209ENST00000544349 BRMS1Q9HCU9 246 aa16.41■□□□□ 0.22
VPS33A-209ENST00000544349 SH3GLB2Q9NR46 395 aa16.41■□□□□ 0.22
VPS33A-209ENST00000544349 KINO60870 393 aaKnown RBP16.4■□□□□ 0.22
VPS33A-209ENST00000544349 STX1AQ16623 288 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 CNTNAP1P78357 1384 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 A0A1B0GVL5 298 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 A0A1W2PQ27 194 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 A0A1W2PQ64 194 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 A0A1W2PQD8 194 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 MMP14P50281 582 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 NLRP5P59047 1200 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 FMR1NBQ8N0W7 255 aaPredicted RBP16.4■□□□□ 0.22
VPS33A-209ENST00000544349 MRPS27Q92552 414 aaKnown RBP16.4■□□□□ 0.22
VPS33A-209ENST00000544349 TRIM5Q9C035 493 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 CPVLQ9H3G5 476 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 SPON1Q9HCB6 807 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 CABP5Q9NP86 173 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 MYOZ2Q9NPC6 264 aa16.4■□□□□ 0.22
VPS33A-209ENST00000544349 FZD9O00144 591 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 WNT10BO00744 389 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 MYO1BO43795 1136 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 PPP6R2O75170 966 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 RPS12P25398 132 aaKnown RBP16.39■□□□□ 0.21
VPS33A-209ENST00000544349 NDUFA8P51970 172 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 LRMPQ12912 555 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 SHROOM1Q2M3G4 852 aaPredicted RBP16.39■□□□□ 0.21
VPS33A-209ENST00000544349 ASPRV1Q53RT3 343 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 DNTTIP2Q5QJE6 756 aaKnown RBP16.39■□□□□ 0.21
VPS33A-209ENST00000544349 GPKOWQ92917 476 aaPredicted RBP eCLIP16.39■□□□□ 0.21
VPS33A-209ENST00000544349 TNFRSF25Q93038 417 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 KANSL2Q9H9L4 492 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 VEZTQ9HBM0 779 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 HERC5Q9UII4 1024 aaKnown RBP16.39■□□□□ 0.21
VPS33A-209ENST00000544349 SHTN1A0MZ66 631 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 RBM10P98175 930 aaKnown RBP16.39■□□□□ 0.21
VPS33A-209ENST00000544349 ATP2B2Q01814 1243 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 AXDND1Q5T1B0 1012 aaPredicted RBP16.39■□□□□ 0.21
VPS33A-209ENST00000544349 TMEM179Q6ZVK1 233 aa16.39■□□□□ 0.21
VPS33A-209ENST00000544349 CCDC186Q7Z3E2 898 aa16.39■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms