RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 COL11A1P12107 1806 aaPredicted RBP20.85■□□□□ 0.93
DDX41-217ENST00000515562 MSCO60682 206 aa20.85■□□□□ 0.93
DDX41-217ENST00000515562 SLC25A27O95847 323 aa20.85■□□□□ 0.93
DDX41-217ENST00000515562 SLC3A2P08195 630 aaKnown RBP20.85■□□□□ 0.93
DDX41-217ENST00000515562 MNX1P50219 401 aaPredicted RBP20.85■□□□□ 0.93
DDX41-217ENST00000515562 SAMD1Q6SPF0 538 aaPredicted RBP20.85■□□□□ 0.93
DDX41-217ENST00000515562 NCAPG2Q86XI2 1143 aa20.85■□□□□ 0.93
DDX41-217ENST00000515562 ZNF444Q8N0Y2 327 aaPredicted RBP20.85■□□□□ 0.93
DDX41-217ENST00000515562 NPLOC4Q8TAT6 608 aa20.85■□□□□ 0.93
DDX41-217ENST00000515562 SEC62Q99442 399 aaKnown RBP20.85■□□□□ 0.93
DDX41-217ENST00000515562 NAPBQ9H115 298 aa20.85■□□□□ 0.93
DDX41-217ENST00000515562 STAP2Q9UGK3 403 aa20.85■□□□□ 0.93
DDX41-217ENST00000515562 PPP1R9AQ9ULJ8 1098 aa20.85■□□□□ 0.93
DDX41-217ENST00000515562 SYNPO2Q9UMS6 1093 aa20.85■□□□□ 0.93
DDX41-217ENST00000515562 ADAMTS5Q9UNA0 930 aa20.85■□□□□ 0.93
DDX41-217ENST00000515562 PLIN4Q96Q06 1357 aa20.85■□□□□ 0.93
DDX41-217ENST00000515562 PDE4BQ07343 736 aa20.84■□□□□ 0.93
DDX41-217ENST00000515562 TMEM132BQ14DG7 1078 aa20.84■□□□□ 0.93
DDX41-217ENST00000515562 FAM83BQ5T0W9 1011 aa20.84■□□□□ 0.93
DDX41-217ENST00000515562 OLFML2BQ68BL8 750 aa20.84■□□□□ 0.93
DDX41-217ENST00000515562 LHX8Q68G74 356 aa20.84■□□□□ 0.93
DDX41-217ENST00000515562 EVI5LQ96CN4 794 aa20.84■□□□□ 0.93
DDX41-217ENST00000515562 FBXO28Q9NVF7 368 aa20.84■□□□□ 0.93
DDX41-217ENST00000515562 MYH4Q9Y623 1939 aa20.84■□□□□ 0.93
DDX41-217ENST00000515562 IGKV6D-41A0A0C4DH26 115 aa20.83■□□□□ 0.93
DDX41-217ENST00000515562 PRDM1O75626 825 aa20.83■□□□□ 0.93
DDX41-217ENST00000515562 COPB2P35606 906 aa20.83■□□□□ 0.93
DDX41-217ENST00000515562 PCDH10Q9P2E7 1040 aa20.83■□□□□ 0.93
DDX41-217ENST00000515562 VWA5AO00534 786 aa20.82■□□□□ 0.92
DDX41-217ENST00000515562 IGHA2P01877 340 aa20.82■□□□□ 0.92
DDX41-217ENST00000515562 FCER1AP12319 257 aa20.82■□□□□ 0.92
DDX41-217ENST00000515562 FXR1P51114 621 aaKnown RBP eCLIP20.82■□□□□ 0.92
DDX41-217ENST00000515562 PDE1AP54750 535 aa20.82■□□□□ 0.92
DDX41-217ENST00000515562 DDX20Q9UHI6 824 aaKnown RBP20.82■□□□□ 0.92
DDX41-217ENST00000515562 F5H6K3 240 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 TTLL1O95922 423 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 NDUFB10O96000 172 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 CYP2C19P33261 490 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 KLRC3Q07444 240 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 PPARAQ07869 468 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 TICAM2Q86XR7 235 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 RIOX2Q8IUF8 465 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 CEP95Q96GE4 821 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 SLF1Q9BQI6 1058 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 MTMR4Q9NYA4 1195 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 CLIP2Q9UDT6 1046 aa20.81■□□□□ 0.92
DDX41-217ENST00000515562 ZNF214Q9UL59 606 aaPredicted RBP20.81■□□□□ 0.92
DDX41-217ENST00000515562 PFASO15067 1338 aa20.8■□□□□ 0.92
DDX41-217ENST00000515562 TSPY3P0CV98 308 aa20.8■□□□□ 0.92
DDX41-217ENST00000515562 TSPY8P0CW00 308 aa20.8■□□□□ 0.92
DDX41-217ENST00000515562 CYBAP13498 195 aa20.8■□□□□ 0.92
DDX41-217ENST00000515562 CNGA1P29973 690 aa20.8■□□□□ 0.92
DDX41-217ENST00000515562 C7orf61Q8IZ16 206 aa20.8■□□□□ 0.92
DDX41-217ENST00000515562 NEDD1Q8NHV4 660 aa20.8■□□□□ 0.92
DDX41-217ENST00000515562 MKL1Q969V6 931 aa20.8■□□□□ 0.92
DDX41-217ENST00000515562 RBM27Q9P2N5 1060 aaKnown RBP20.8■□□□□ 0.92
DDX41-217ENST00000515562 COBLO75128 1261 aa20.79■□□□□ 0.92
DDX41-217ENST00000515562 COL6A1P12109 1028 aa20.79■□□□□ 0.92
DDX41-217ENST00000515562 STAT3P40763 770 aa20.79■□□□□ 0.92
DDX41-217ENST00000515562 KCTD2Q14681 263 aa20.79■□□□□ 0.92
DDX41-217ENST00000515562 PPP4R3BQ5MIZ7 849 aa20.79■□□□□ 0.92
DDX41-217ENST00000515562 GMCL1P1Q8NEA9 526 aa20.79■□□□□ 0.92
DDX41-217ENST00000515562 REPS2Q8NFH8 660 aa20.79■□□□□ 0.92
DDX41-217ENST00000515562 MMP19Q99542 508 aa20.79■□□□□ 0.92
DDX41-217ENST00000515562 NUP88Q99567 741 aaPredicted RBP20.79■□□□□ 0.92
DDX41-217ENST00000515562 TEX13BQ9BXU2 312 aa20.79■□□□□ 0.92
DDX41-217ENST00000515562 PRO3102Q9H379 93 aa20.79■□□□□ 0.92
DDX41-217ENST00000515562 RWDD1Q9H446 243 aaPredicted RBP20.79■□□□□ 0.92
DDX41-217ENST00000515562 CCDC129Q6ZRS4 1044 aa20.78■□□□□ 0.92
DDX41-217ENST00000515562 SMC5Q8IY18 1101 aa20.78■□□□□ 0.92
DDX41-217ENST00000515562 PRPF38AQ8NAV1 312 aaKnown RBP20.78■□□□□ 0.92
DDX41-217ENST00000515562 TRPV1Q8NER1 839 aa20.78■□□□□ 0.92
DDX41-217ENST00000515562 MAML3Q96JK9 1138 aa20.78■□□□□ 0.92
DDX41-217ENST00000515562 HELLSQ9NRZ9 838 aa20.78■□□□□ 0.92
DDX41-217ENST00000515562 TRIOBPQ9H2D6 2365 aa20.78■□□□□ 0.92
DDX41-217ENST00000515562 A0A1W2PPC1 479 aa20.77■□□□□ 0.92
DDX41-217ENST00000515562 FOXP2O15409 715 aa20.77■□□□□ 0.92
DDX41-217ENST00000515562 LRRC47Q8N1G4 583 aaKnown RBP20.77■□□□□ 0.92
DDX41-217ENST00000515562 LNPKQ9C0E8 428 aa20.77■□□□□ 0.92
DDX41-217ENST00000515562 DNM1LO00429 736 aa20.76■□□□□ 0.91
DDX41-217ENST00000515562 SEPT4O43236 478 aa20.76■□□□□ 0.91
DDX41-217ENST00000515562 TFAP4Q01664 338 aa20.76■□□□□ 0.91
DDX41-217ENST00000515562 FAM47AQ5JRC9 791 aa20.76■□□□□ 0.91
DDX41-217ENST00000515562 NRBP1Q9UHY1 535 aa20.76■□□□□ 0.91
DDX41-217ENST00000515562 FEM1BQ9UK73 627 aa20.76■□□□□ 0.91
DDX41-217ENST00000515562 DIS3Q9Y2L1 958 aaKnown RBP20.76■□□□□ 0.91
DDX41-217ENST00000515562 PLXNA1Q9UIW2 1896 aa20.75■□□□□ 0.91
DDX41-217ENST00000515562 ZNFX1Q9P2E3 1918 aaKnown RBP20.75■□□□□ 0.91
DDX41-217ENST00000515562 ATP2A1O14983 1001 aa20.75■□□□□ 0.91
DDX41-217ENST00000515562 SNRNP48Q6IEG0 339 aaKnown RBP20.75■□□□□ 0.91
DDX41-217ENST00000515562 ANAPC4Q9UJX5 808 aa20.75■□□□□ 0.91
DDX41-217ENST00000515562 DDX52Q9Y2R4 599 aaKnown RBP eCLIP20.75■□□□□ 0.91
DDX41-217ENST00000515562 CTDP1Q9Y5B0 961 aaPredicted RBP20.75■□□□□ 0.91
DDX41-217ENST00000515562 RANBP2P49792 3224 aaKnown RBP20.74■□□□□ 0.91
DDX41-217ENST00000515562 TSPY2A6NKD2 308 aa20.74■□□□□ 0.91
DDX41-217ENST00000515562 ZBED4O75132 1171 aa20.74■□□□□ 0.91
DDX41-217ENST00000515562 ALX1Q15699 326 aa20.74■□□□□ 0.91
DDX41-217ENST00000515562 MCMDC2Q4G0Z9 681 aa20.74■□□□□ 0.91
DDX41-217ENST00000515562 VPS53Q5VIR6 699 aa20.74■□□□□ 0.91
DDX41-217ENST00000515562 SLFN13Q68D06 897 aa20.74■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 77.9 ms