RNA–Protein interactions for RNA: ENST00000494566.5

CCDC88B-210, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 2,909 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-210ENST00000494566 SASH3O75995 380 aa18.77■□□□□ 0.59
CCDC88B-210ENST00000494566 ABL1P00519 1130 aa18.77■□□□□ 0.59
CCDC88B-210ENST00000494566 BMS1Q14692 1282 aaKnown RBP18.77■□□□□ 0.59
CCDC88B-210ENST00000494566 MAPKAPK5Q8IW41 473 aa18.77■□□□□ 0.59
CCDC88B-210ENST00000494566 TNFRSF25Q93038 417 aa18.77■□□□□ 0.59
CCDC88B-210ENST00000494566 HINFPQ9BQA5 517 aa18.77■□□□□ 0.59
CCDC88B-210ENST00000494566 SEMA3EO15041 775 aa18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 DDAH1O94760 285 aa18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 SCG2P13521 617 aa18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 MRPL44Q9H9J2 332 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 ATP8A2Q9NTI2 1148 aa18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 ORC4O43929 436 aa18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 LDHBP07195 334 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 GOLGA8HP0CJ92 632 aa18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 CCT6AP40227 531 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 PLCD1P51178 756 aa18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 ZNF579Q8NAF0 562 aaKnown RBP18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 BRMS1Q9HCU9 246 aa18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 USP21Q9UK80 565 aa18.76■□□□□ 0.59
CCDC88B-210ENST00000494566 FAM205AQ6ZU69 1335 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 UBAP1LF5GYI3 381 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 TOM1O60784 492 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 PAGE5Q96GU1 130 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 SUGCTQ9HAC7 445 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 ARPP21Q9UBL0 812 aaPredicted RBP18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 CBFA2T2O43439 604 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 CALM1P0DP23 149 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 CALM2P0DP24 149 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 CALM3P0DP25 149 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 IL17AQ16552 155 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 TYW1BQ6NUM6 668 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 KAT14Q9H8E8 782 aa18.75■□□□□ 0.59
CCDC88B-210ENST00000494566 PPP2R5BQ15173 497 aa18.74■□□□□ 0.59
CCDC88B-210ENST00000494566 RC3H1Q5TC82 1133 aaKnown RBP18.74■□□□□ 0.59
CCDC88B-210ENST00000494566 MKNK2Q9HBH9 465 aa18.74■□□□□ 0.59
CCDC88B-210ENST00000494566 STX8Q9UNK0 236 aa18.74■□□□□ 0.59
CCDC88B-210ENST00000494566 KIF2AO00139 706 aaPredicted RBP18.74■□□□□ 0.59
CCDC88B-210ENST00000494566 NT5DC1Q5TFE4 455 aa18.74■□□□□ 0.59
CCDC88B-210ENST00000494566 PNMA1Q8ND90 353 aa18.74■□□□□ 0.59
CCDC88B-210ENST00000494566 IRS2Q9Y4H2 1338 aa18.74■□□□□ 0.59
CCDC88B-210ENST00000494566 PES1O00541 588 aaKnown RBP18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 PPP2R3AQ06190 1150 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 TADA3O75528 432 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 SLC35G1Q2M3R5 365 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 TRAPPC3LQ5T215 181 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 TMEM139Q8IV31 216 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 TC2NQ8N9U0 490 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 CNBD1Q8NA66 436 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 MLKLQ8NB16 471 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 LRRC4BQ9NT99 713 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 TFR2Q9UP52 801 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 ZNF18P17022 549 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 DPYDQ12882 1025 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 MCM6Q14566 821 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 C12orf60Q5U649 245 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 PLIN2Q99541 437 aa18.73■□□□□ 0.59
CCDC88B-210ENST00000494566 CCDC88AQ3V6T2 1871 aa18.72■□□□□ 0.59
CCDC88B-210ENST00000494566 PFKFB3Q16875 520 aaPredicted RBP18.72■□□□□ 0.59
CCDC88B-210ENST00000494566 RHOXF2BP0C7M4 288 aa18.72■□□□□ 0.59
CCDC88B-210ENST00000494566 OAS2P29728 719 aaKnown RBP18.72■□□□□ 0.59
CCDC88B-210ENST00000494566 RHOXF2Q9BQY4 288 aa18.72■□□□□ 0.59
CCDC88B-210ENST00000494566 KIAA1551Q9HCM1 1747 aa18.72■□□□□ 0.59
CCDC88B-210ENST00000494566 PP2D1A8MPX8 630 aa18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 PHACTR2O75167 634 aa18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 HNRNPH2P55795 449 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 GPSM2P81274 684 aa18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 GRAPQ13588 217 aa18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 GRAPLQ8TC17 118 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 ENOX1Q8TC92 643 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 TSPY3P0CV98 308 aa18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 TSPY8P0CW00 308 aa18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 ATP2C1P98194 919 aaPredicted RBP18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 SBK1Q52WX2 424 aa18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 PARD6BQ9BYG5 372 aa18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 MKRN1Q9UHC7 482 aaKnown RBP18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 XDHP47989 1333 aa18.71■□□□□ 0.59
CCDC88B-210ENST00000494566 LAMB1P07942 1786 aa18.71■□□□□ 0.58
CCDC88B-210ENST00000494566 DLEC1Q9Y238 1755 aa18.71■□□□□ 0.58
CCDC88B-210ENST00000494566 PCP11498 1178 aaKnown RBP18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 CUL4BQ13620 913 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 ACRBPQ8NEB7 543 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 SPATA20Q8TB22 786 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 MTRQ99707 1265 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 ARGLU1Q9NWB6 273 aaPredicted RBP18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 UFL1O94874 794 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 RBL2Q08999 1139 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 SPECC1LQ69YQ0 1117 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 HEATR3Q7Z4Q2 680 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 CTNND2Q9UQB3 1225 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 ZSCAN12O43309 604 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 CYTH3O43739 400 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 PRR5LQ6MZQ0 368 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 KANK3Q6NY19 840 aa18.7■□□□□ 0.58
CCDC88B-210ENST00000494566 SPTY2D1Q68D10 685 aaPredicted RBP18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 RAD9BQ6WBX8 426 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 SH3RF1Q7Z6J0 888 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 FERMT2Q96AC1 680 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 GDAP1L1Q96MZ0 367 aa18.69■□□□□ 0.58
CCDC88B-210ENST00000494566 VPS16Q9H269 839 aa18.69■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms