RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 C16orf86Q6ZW13 317 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 SPICE1Q8N0Z3 855 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 SLC17A8Q8NDX2 589 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 MKNK2Q9HBH9 465 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 ECHDC1Q9NTX5 307 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 ZBTB47Q9UFB7 747 aaPredicted RBP13.87□□□□□ -0.19
COL6A3-213ENST00000493475 NRBP1Q9UHY1 535 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 PLXNB2O15031 1838 aa13.87□□□□□ -0.19
COL6A3-213ENST00000493475 CYP2D6P10635 497 aa13.86□□□□□ -0.19
COL6A3-213ENST00000493475 AKR1B1P15121 316 aa13.86□□□□□ -0.19
COL6A3-213ENST00000493475 GNAT2P19087 354 aa13.86□□□□□ -0.19
COL6A3-213ENST00000493475 LRRC26Q2I0M4 334 aa13.86□□□□□ -0.19
COL6A3-213ENST00000493475 GIMAP6Q6P9H5 292 aa13.86□□□□□ -0.19
COL6A3-213ENST00000493475 DEFB123Q8N688 67 aa13.86□□□□□ -0.19
COL6A3-213ENST00000493475 SLC44A5Q8NCS7 719 aa13.86□□□□□ -0.19
COL6A3-213ENST00000493475 DYNLL2Q96FJ2 89 aa13.86□□□□□ -0.19
COL6A3-213ENST00000493475 MMP19Q99542 508 aa13.86□□□□□ -0.19
COL6A3-213ENST00000493475 FLRT1Q9NZU1 646 aa13.86□□□□□ -0.19
COL6A3-213ENST00000493475 PRKAB2O43741 272 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 SLC3A2P08195 630 aaKnown RBP13.85□□□□□ -0.19
COL6A3-213ENST00000493475 RARBP10826 455 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 CYBAP13498 195 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 PPP4R3BQ5MIZ7 849 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 POTEEQ6S8J3 1075 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 RNF180Q86T96 592 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 SIRT2Q8IXJ6 389 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 NPLOC4Q8TAT6 608 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 LRCH3Q96II8 777 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 NACAP1Q9BZK3 213 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 CNPY2Q9Y2B0 182 aa13.85□□□□□ -0.19
COL6A3-213ENST00000493475 SZT2Q5T011 3432 aa13.84□□□□□ -0.19
COL6A3-213ENST00000493475 SPDYE4A6NLX3 237 aa13.84□□□□□ -0.19
COL6A3-213ENST00000493475 ERC2O15083 957 aa13.84□□□□□ -0.19
COL6A3-213ENST00000493475 EEF2P13639 858 aaKnown RBP13.84□□□□□ -0.19
COL6A3-213ENST00000493475 STAT3P40763 770 aa13.84□□□□□ -0.19
COL6A3-213ENST00000493475 TDO2P48775 406 aa13.84□□□□□ -0.19
COL6A3-213ENST00000493475 ATN1P54259 1190 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-213ENST00000493475 MDM2Q00987 491 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-213ENST00000493475 ZNF444Q8N0Y2 327 aaPredicted RBP13.84□□□□□ -0.19
COL6A3-213ENST00000493475 ATG4CQ96DT6 458 aa13.84□□□□□ -0.19
COL6A3-213ENST00000493475 ATP11BQ9Y2G3 1177 aa13.84□□□□□ -0.19
COL6A3-213ENST00000493475 DIS3Q9Y2L1 958 aaKnown RBP13.84□□□□□ -0.19
COL6A3-213ENST00000493475 ZNF236Q9UL36 1845 aa13.83□□□□□ -0.2
COL6A3-213ENST00000493475 SOX1O00570 391 aaPredicted RBP13.83□□□□□ -0.2
COL6A3-213ENST00000493475 APPP05067 770 aa13.83□□□□□ -0.2
COL6A3-213ENST00000493475 SBK1Q52WX2 424 aa13.83□□□□□ -0.2
COL6A3-213ENST00000493475 GJC2Q5T442 439 aaPredicted RBP13.83□□□□□ -0.2
COL6A3-213ENST00000493475 CTR9Q6PD62 1173 aa13.83□□□□□ -0.2
COL6A3-213ENST00000493475 RIOX2Q8IUF8 465 aa13.83□□□□□ -0.2
COL6A3-213ENST00000493475 KBTBD3Q8NAB2 608 aa13.83□□□□□ -0.2
COL6A3-213ENST00000493475 APPBP2Q92624 585 aa13.83□□□□□ -0.2
COL6A3-213ENST00000493475 MAML3Q96JK9 1138 aa13.83□□□□□ -0.2
COL6A3-213ENST00000493475 TEX13BQ9BXU2 312 aa13.83□□□□□ -0.2
COL6A3-213ENST00000493475 PPP1R9AQ9ULJ8 1098 aa13.83□□□□□ -0.2
COL6A3-213ENST00000493475 LAMA3Q16787 3333 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 MINDY4BA8MYZ0 360 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 VWA5AO00534 786 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 ZBED4O75132 1171 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 RTP1P59025 263 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 TMEM132BQ14DG7 1078 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 MSL3Q8N5Y2 521 aaKnown RBP13.82□□□□□ -0.2
COL6A3-213ENST00000493475 DDX11Q96FC9 970 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 SLF1Q9BQI6 1058 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 XPNPEP3Q9NQH7 507 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 PRDM5Q9NQX1 630 aaPredicted RBP13.82□□□□□ -0.2
COL6A3-213ENST00000493475 FBXO40Q9UH90 709 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 SYNPO2Q9UMS6 1093 aa13.82□□□□□ -0.2
COL6A3-213ENST00000493475 RNF113AO15541 343 aaKnown RBP13.81□□□□□ -0.2
COL6A3-213ENST00000493475 COBLO75128 1261 aa13.81□□□□□ -0.2
COL6A3-213ENST00000493475 AKR1A1P14550 325 aa13.81□□□□□ -0.2
COL6A3-213ENST00000493475 PDE4BQ07343 736 aa13.81□□□□□ -0.2
COL6A3-213ENST00000493475 FAM83BQ5T0W9 1011 aa13.81□□□□□ -0.2
COL6A3-213ENST00000493475 SLC39A5Q6ZMH5 540 aa13.81□□□□□ -0.2
COL6A3-213ENST00000493475 PRPF38AQ8NAV1 312 aaKnown RBP13.81□□□□□ -0.2
COL6A3-213ENST00000493475 STRBPQ96SI9 672 aaKnown RBP13.81□□□□□ -0.2
COL6A3-213ENST00000493475 TINF2Q9BSI4 451 aa13.81□□□□□ -0.2
COL6A3-213ENST00000493475 PUS7LQ9H0K6 701 aaKnown RBP13.81□□□□□ -0.2
COL6A3-213ENST00000493475 SPC25Q9HBM1 224 aa13.81□□□□□ -0.2
COL6A3-213ENST00000493475 NYAP2Q9P242 653 aa13.81□□□□□ -0.2
COL6A3-213ENST00000493475 STXBP5LQ9Y2K9 1186 aa13.81□□□□□ -0.2
COL6A3-213ENST00000493475 MYH8P13535 1937 aa13.8□□□□□ -0.2
COL6A3-213ENST00000493475 CYP2D7A0A087X1C5 515 aa13.8□□□□□ -0.2
COL6A3-213ENST00000493475 FDX1P10109 184 aa13.8□□□□□ -0.2
COL6A3-213ENST00000493475 CLEC10AQ8IUN9 316 aa13.8□□□□□ -0.2
COL6A3-213ENST00000493475 NUP133Q8WUM0 1156 aa13.8□□□□□ -0.2
COL6A3-213ENST00000493475 ISY1Q9ULR0 285 aaKnown RBP13.8□□□□□ -0.2
COL6A3-213ENST00000493475 ADAMTS5Q9UNA0 930 aa13.8□□□□□ -0.2
COL6A3-213ENST00000493475 ALPK3Q96L96 1907 aa13.8□□□□□ -0.2
COL6A3-213ENST00000493475 A0A0G2JMZ2 1700 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 F5H6K3 240 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 TSPY3P0CV98 308 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 TSPY8P0CW00 308 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 ADCYAP1R1P41586 468 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 KLRC3Q07444 240 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 LRRC41Q15345 812 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 ZNF697Q5TEC3 545 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 C1orf53Q5VUE5 145 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 ANO1Q5XXA6 986 aa13.79□□□□□ -0.2
COL6A3-213ENST00000493475 FAM109BQ6ICB4 259 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-213ENST00000493475 SNRNP48Q6IEG0 339 aaKnown RBP13.79□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms