RNA–Protein interactions for RNA: ENST00000488376.2

SYNE1-226, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 414 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-226ENST00000488376 HIP1O00291 1037 aa16.49■□□□□ 0.23
SYNE1-226ENST00000488376 CCL5P13501 91 aa16.49■□□□□ 0.23
SYNE1-226ENST00000488376 TMEM132BQ14DG7 1078 aa16.49■□□□□ 0.23
SYNE1-226ENST00000488376 CCL14Q16627 93 aa16.49■□□□□ 0.23
SYNE1-226ENST00000488376 WDR78Q5VTH9 848 aa16.49■□□□□ 0.23
SYNE1-226ENST00000488376 PLEKHH3Q7Z736 793 aa16.49■□□□□ 0.23
SYNE1-226ENST00000488376 TRIB2Q92519 343 aa16.49■□□□□ 0.23
SYNE1-226ENST00000488376 SPATC1LQ9H0A9 340 aa16.49■□□□□ 0.23
SYNE1-226ENST00000488376 TOMM22Q9NS69 142 aa16.49■□□□□ 0.23
SYNE1-226ENST00000488376 ADAMTS5Q9UNA0 930 aa16.49■□□□□ 0.23
SYNE1-226ENST00000488376 PARP14Q460N5 1801 aa16.48■□□□□ 0.23
SYNE1-226ENST00000488376 MFAP1P55081 439 aaKnown RBP16.48■□□□□ 0.23
SYNE1-226ENST00000488376 PLS1Q14651 629 aa16.48■□□□□ 0.23
SYNE1-226ENST00000488376 CENPQQ7L2Z9 268 aaPredicted RBP16.48■□□□□ 0.23
SYNE1-226ENST00000488376 REPS2Q8NFH8 660 aa16.48■□□□□ 0.23
SYNE1-226ENST00000488376 PXYLP1Q8TE99 480 aa16.48■□□□□ 0.23
SYNE1-226ENST00000488376 SHISA4Q96DD7 197 aa16.48■□□□□ 0.23
SYNE1-226ENST00000488376 PPP1R9AQ9ULJ8 1098 aa16.48■□□□□ 0.23
SYNE1-226ENST00000488376 DOCK3Q8IZD9 2030 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 VWA5AO00534 786 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 TNRC18O15417 2968 aaPredicted RBP16.47■□□□□ 0.23
SYNE1-226ENST00000488376 ERCC3P19447 782 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 CCNA1P78396 465 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 PTH1RQ03431 593 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 AKNAD1Q5T1N1 836 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 CCAR1Q8IX12 1150 aaKnown RBP16.47■□□□□ 0.23
SYNE1-226ENST00000488376 GMCL1P1Q8NEA9 526 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 STAG1Q8WVM7 1258 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 NUDT12Q9BQG2 462 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 DSCC1Q9BVC3 393 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 TMEM106CQ9BVX2 250 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 FLRT1Q9NZU1 646 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 STX8Q9UNK0 236 aa16.47■□□□□ 0.23
SYNE1-226ENST00000488376 RBBP6Q7Z6E9 1792 aaKnown RBP16.46■□□□□ 0.23
SYNE1-226ENST00000488376 PTPREP23469 700 aa16.46■□□□□ 0.23
SYNE1-226ENST00000488376 NOVP48745 357 aa16.46■□□□□ 0.23
SYNE1-226ENST00000488376 SLFN13Q68D06 897 aa16.46■□□□□ 0.23
SYNE1-226ENST00000488376 SOCS4Q8WXH5 440 aa16.46■□□□□ 0.23
SYNE1-226ENST00000488376 SLF1Q9BQI6 1058 aa16.46■□□□□ 0.23
SYNE1-226ENST00000488376 RNF208Q9H0X6 261 aa16.46■□□□□ 0.23
SYNE1-226ENST00000488376 MTMR7Q9Y216 660 aa16.46■□□□□ 0.23
SYNE1-226ENST00000488376 TAF6LQ9Y6J9 622 aa16.46■□□□□ 0.23
SYNE1-226ENST00000488376 ZNF213O14771 459 aa16.45■□□□□ 0.22
SYNE1-226ENST00000488376 MCCP23508 829 aa16.45■□□□□ 0.22
SYNE1-226ENST00000488376 UBXN2AP68543 259 aa16.45■□□□□ 0.22
SYNE1-226ENST00000488376 RCSD1Q6JBY9 416 aa16.45■□□□□ 0.22
SYNE1-226ENST00000488376 MFSD6Q6ZSS7 791 aa16.45■□□□□ 0.22
SYNE1-226ENST00000488376 MB21D1Q8N884 522 aa16.45■□□□□ 0.22
SYNE1-226ENST00000488376 NPLOC4Q8TAT6 608 aa16.45■□□□□ 0.22
SYNE1-226ENST00000488376 ZKSCAN3Q9BRR0 538 aa16.45■□□□□ 0.22
SYNE1-226ENST00000488376 CWC22Q9HCG8 908 aaKnown RBP16.45■□□□□ 0.22
SYNE1-226ENST00000488376 ZNF214Q9UL59 606 aaPredicted RBP16.45■□□□□ 0.22
SYNE1-226ENST00000488376 MYH4Q9Y623 1939 aa16.45■□□□□ 0.22
SYNE1-226ENST00000488376 SLC15A5A6NIM6 579 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 HMGCRP04035 888 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 MAP2K5Q13163 448 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 GRB14Q14449 540 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 KCTD1Q719H9 257 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 NCAPG2Q86XI2 1143 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 KIFC2Q96AC6 838 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 APBA2Q99767 749 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 SYNPO2Q9UMS6 1093 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 LAMA4Q16363 1823 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 RAD50Q92878 1312 aa16.44■□□□□ 0.22
SYNE1-226ENST00000488376 MKI67P46013 3256 aaKnown RBP16.43■□□□□ 0.22
SYNE1-226ENST00000488376 B4E1Z4 1266 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 TMEM232C9JQI7 657 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 SGSM2O43147 1006 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 COBLO75128 1261 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 BMP3P12645 472 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 XRCC5P13010 732 aaKnown RBP16.43■□□□□ 0.22
SYNE1-226ENST00000488376 ADORA2AP29274 412 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 RGS2P41220 211 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 SNAP25P60880 206 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 SHCBP1Q8NEM2 672 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 GMCL1Q96IK5 515 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 TMEM47Q9BQJ4 181 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 PAK6Q9NQU5 681 aaPredicted RBP16.43■□□□□ 0.22
SYNE1-226ENST00000488376 ISY1Q9ULR0 285 aaKnown RBP16.43■□□□□ 0.22
SYNE1-226ENST00000488376 RIPK3Q9Y572 518 aa16.43■□□□□ 0.22
SYNE1-226ENST00000488376 COL11A1P12107 1806 aaPredicted RBP16.42■□□□□ 0.22
SYNE1-226ENST00000488376 KDM4AO75164 1064 aa16.42■□□□□ 0.22
SYNE1-226ENST00000488376 GJB1P08034 283 aa16.42■□□□□ 0.22
SYNE1-226ENST00000488376 PRKAR2AP13861 404 aaKnown RBP16.42■□□□□ 0.22
SYNE1-226ENST00000488376 ZKSCAN1P17029 563 aaPredicted RBP16.42■□□□□ 0.22
SYNE1-226ENST00000488376 STAT3P40763 770 aa16.42■□□□□ 0.22
SYNE1-226ENST00000488376 GJA8P48165 433 aa16.42■□□□□ 0.22
SYNE1-226ENST00000488376 CACNB2Q08289 660 aaPredicted RBP16.42■□□□□ 0.22
SYNE1-226ENST00000488376 MAP3K21Q5TCX8 1036 aa16.42■□□□□ 0.22
SYNE1-226ENST00000488376 RIOX2Q8IUF8 465 aa16.42■□□□□ 0.22
SYNE1-226ENST00000488376 PRPF38AQ8NAV1 312 aaKnown RBP16.42■□□□□ 0.22
SYNE1-226ENST00000488376 U2AF1L4Q8WU68 220 aaKnown RBP16.42■□□□□ 0.22
SYNE1-226ENST00000488376 CCDC136Q96JN2 1154 aa16.42■□□□□ 0.22
SYNE1-226ENST00000488376 DEFB118Q96PH6 123 aa16.42■□□□□ 0.22
SYNE1-226ENST00000488376 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.42■□□□□ 0.22
SYNE1-226ENST00000488376 RAVER2Q9HCJ3 691 aaKnown RBP16.42■□□□□ 0.22
SYNE1-226ENST00000488376 TCP11L1Q9NUJ3 509 aa16.42■□□□□ 0.22
SYNE1-226ENST00000488376 IVNS1ABPQ9Y6Y0 642 aa16.42■□□□□ 0.22
SYNE1-226ENST00000488376 TAL1P17542 331 aaPredicted RBP16.41■□□□□ 0.22
SYNE1-226ENST00000488376 CCND3P30281 292 aaPredicted RBP16.41■□□□□ 0.22
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms