RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, human

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHROOM3-208	ENST00000486758	TRIM47	Q96LD4	638 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	HPS5	Q9UPZ3	1129 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	RGPD1	P0DJD0	1748 aa		13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	MED1	Q15648	1581 aa	Predicted RBP	13.86	□□□□□ -0.19
SHROOM3-208	ENST00000486758	NDUFAB1	O14561	156 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ATP8B1	O43520	1251 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	KCNQ2	O43526	872 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	DEXI	O95424	95 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	KRT2	P35908	639 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	PICALM	Q13492	652 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GIMAP7	Q8NHV1	300 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	SETDB2	Q96T68	719 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CSRNP2	Q9H175	543 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	C6orf229	H3BNL8	230 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GNPAT	O15228	680 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CDR1	P51861	262 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CDK5RAP3	Q96JB5	506 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	NLRP3	Q96P20	1036 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CPVL	Q9H3G5	476 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	LOC102724428	A0A0B4J2F2	783 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GOLGA6B	A6NDN3	693 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	MPHOSPH10	O00566	681 aa	Known RBP	13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	SIK1	P57059	783 aa		13.85	□□□□□ -0.19
SHROOM3-208	ENST00000486758	PLEKHA8P1	O95397	391 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	R3HDM1	Q15032	1099 aa	Known RBP	13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	UBE3C	Q15386	1083 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CCDC178	Q5BJE1	867 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	RILPL1	Q5EBL4	403 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	GNGT1	P63211	74 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	HLTF	Q14527	1009 aa	Known RBP eCLIP	13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	SPA17	Q15506	151 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	MAATS1	Q7Z4T9	603 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	OTUD6B	Q8N6M0	293 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CRNKL1	Q9BZJ0	848 aa	Known RBP	13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ADGRG1	Q9Y653	693 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	INPP5B	P32019	993 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	HPD	P32754	393 aa	Predicted RBP	13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	MTIF2	P46199	727 aa	Known RBP	13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	SOGA3	Q5TF21	947 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ANKRD13C	Q8N6S4	541 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	LUC7L2	Q9Y383	392 aa	Known RBP	13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	UBN2	Q6ZU65	1347 aa		13.84	□□□□□ -0.19
SHROOM3-208	ENST00000486758	NWD1	Q149M9	1564 aa		13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	MYO1B	O43795	1136 aa		13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TSPY3	P0CV98	308 aa		13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TSPY8	P0CW00	308 aa		13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CXCR5	P32302	372 aa		13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	STAT6	P42226	847 aa		13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	PTPRO	Q16827	1216 aa		13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	ERFE	Q4G0M1	354 aa		13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	FOXP4	Q8IVH2	680 aa	Predicted RBP	13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	FAM71B	Q8TC56	605 aa		13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	TTF2	Q9UNY4	1162 aa	Known RBP	13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	CAPN7	Q9Y6W3	813 aa		13.83	□□□□□ -0.19
SHROOM3-208	ENST00000486758	SOS2	Q07890	1332 aa	Predicted RBP	13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	RGPD2	P0DJD1	1756 aa		13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	CYP2D6	P10635	497 aa		13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	CYP19A1	P11511	503 aa	Predicted RBP	13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	USP8	P40818	1118 aa		13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	EN1	Q05925	392 aa	Predicted RBP	13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	TDRD12	Q587J7	1177 aa	Known RBP	13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	CCDC47	Q96A33	483 aa	Known RBP	13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	EFCC1	Q9HA90	598 aa		13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	MROH5	Q6ZUA9	1318 aa		13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	SLC7A5	Q01650	507 aa		13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	KCTD19	Q17RG1	926 aa	Predicted RBP	13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	FCHSD1	Q86WN1	690 aa		13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	CTAGE1	Q96RT6	745 aa		13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	LY9	Q9HBG7	655 aa		13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	SRP68	Q9UHB9	627 aa	Known RBP	13.83	□□□□□ -0.2
SHROOM3-208	ENST00000486758	TRIM37	O94972	964 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	MAGEA9	P43362	315 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	RBM5	P52756	815 aa	Known RBP eCLIP	13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	CYP27A1	Q02318	531 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	CT47A1	Q5JQC4	288 aa	Predicted RBP	13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	MAPKAPK5	Q8IW41	473 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	ZSCAN29	Q8IWY8	852 aa	Predicted RBP	13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	TMTC2	Q8N394	836 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	MKRN1	Q9UHC7	482 aa	Known RBP	13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	PALLD	Q8WX93	1383 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	C2orf54	Q08AI8	447 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	FBXW10	Q5XX13	1052 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	KANK3	Q6NY19	840 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	BPIFA3	Q9BQP9	254 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	SAR1B	Q9Y6B6	198 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	TNS3	Q68CZ2	1445 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	TULP2	O00295	520 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	AKR1B10	O60218	316 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	ARID5A	Q03989	594 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	TTC38	Q5R3I4	469 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	CYP26C1	Q6V0L0	522 aa		13.82	□□□□□ -0.2
SHROOM3-208	ENST00000486758	GSG1L2	A8MUP6	293 aa		13.81	□□□□□ -0.2
SHROOM3-208	ENST00000486758	RIMBP2	O15034	1052 aa		13.81	□□□□□ -0.2
SHROOM3-208	ENST00000486758	ABL1	P00519	1130 aa		13.81	□□□□□ -0.2
SHROOM3-208	ENST00000486758	FXR1	P51114	621 aa	Known RBP eCLIP	13.81	□□□□□ -0.2
SHROOM3-208	ENST00000486758	PTGDR	Q13258	359 aa		13.81	□□□□□ -0.2
SHROOM3-208	ENST00000486758	LETM2	Q2VYF4	491 aa		13.81	□□□□□ -0.2
SHROOM3-208	ENST00000486758	MUM1L1	Q5H9M0	696 aa		13.81	□□□□□ -0.2
SHROOM3-208	ENST00000486758	PACS2	Q86VP3	889 aa		13.81	□□□□□ -0.2

Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms