RNA–Protein interactions for RNA: ENST00000472880.1

COL9A3-210, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 3

Gene COL9A3, Length 959 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-210ENST00000472880 GNAT2P19087 354 aa23.64■■□□□ 1.37
COL9A3-210ENST00000472880 TDO2P48775 406 aa23.64■■□□□ 1.37
COL9A3-210ENST00000472880 TMEM132BQ14DG7 1078 aa23.64■■□□□ 1.37
COL9A3-210ENST00000472880 LRRC26Q2I0M4 334 aa23.64■■□□□ 1.37
COL9A3-210ENST00000472880 STK11IPQ8N1F8 1099 aa23.64■■□□□ 1.37
COL9A3-210ENST00000472880 TRPV1Q8NER1 839 aa23.64■■□□□ 1.37
COL9A3-210ENST00000472880 FBXO28Q9NVF7 368 aa23.64■■□□□ 1.37
COL9A3-210ENST00000472880 TTC41PQ6P2S7 1318 aa23.63■■□□□ 1.37
COL9A3-210ENST00000472880 COBLO75128 1261 aa23.63■■□□□ 1.37
COL9A3-210ENST00000472880 IGHA2P01877 340 aa23.63■■□□□ 1.37
COL9A3-210ENST00000472880 RASA1P20936 1047 aa23.63■■□□□ 1.37
COL9A3-210ENST00000472880 MAGEA10P43363 369 aaPredicted RBP23.63■■□□□ 1.37
COL9A3-210ENST00000472880 FAM83BQ5T0W9 1011 aa23.63■■□□□ 1.37
COL9A3-210ENST00000472880 DNM1LO00429 736 aa23.62■■□□□ 1.37
COL9A3-210ENST00000472880 ERC2O15083 957 aa23.62■■□□□ 1.37
COL9A3-210ENST00000472880 APPP05067 770 aa23.62■■□□□ 1.37
COL9A3-210ENST00000472880 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.62■■□□□ 1.37
COL9A3-210ENST00000472880 SENP6Q9GZR1 1112 aaPredicted RBP23.62■■□□□ 1.37
COL9A3-210ENST00000472880 EPB41L4AQ9HCS5 686 aaPredicted RBP23.62■■□□□ 1.37
COL9A3-210ENST00000472880 PPP1R9AQ9ULJ8 1098 aa23.62■■□□□ 1.37
COL9A3-210ENST00000472880 ADAMTS5Q9UNA0 930 aa23.62■■□□□ 1.37
COL9A3-210ENST00000472880 M0R2C6 588 aa23.61■■□□□ 1.37
COL9A3-210ENST00000472880 VWA5AO00534 786 aa23.61■■□□□ 1.37
COL9A3-210ENST00000472880 RIOX2Q8IUF8 465 aa23.61■■□□□ 1.37
COL9A3-210ENST00000472880 MMP19Q99542 508 aa23.61■■□□□ 1.37
COL9A3-210ENST00000472880 ZNF287Q9HBT7 754 aa23.61■■□□□ 1.37
COL9A3-210ENST00000472880 SOX1O00570 391 aaPredicted RBP23.6■■□□□ 1.37
COL9A3-210ENST00000472880 COPB2P35606 906 aa23.6■■□□□ 1.37
COL9A3-210ENST00000472880 MAML3Q96JK9 1138 aa23.6■■□□□ 1.37
COL9A3-210ENST00000472880 NYAP2Q9P242 653 aa23.6■■□□□ 1.37
COL9A3-210ENST00000472880 PCDHB15Q9Y5E8 787 aa23.6■■□□□ 1.37
COL9A3-210ENST00000472880 SEPT4O43236 478 aa23.59■■□□□ 1.37
COL9A3-210ENST00000472880 STAT3P40763 770 aa23.59■■□□□ 1.37
COL9A3-210ENST00000472880 KCTD2Q14681 263 aa23.59■■□□□ 1.37
COL9A3-210ENST00000472880 ARRDC4Q8NCT1 418 aa23.59■■□□□ 1.37
COL9A3-210ENST00000472880 LRCH3Q96II8 777 aa23.59■■□□□ 1.37
COL9A3-210ENST00000472880 FSD1Q9BTV5 496 aa23.59■■□□□ 1.37
COL9A3-210ENST00000472880 UBE2OQ9C0C9 1292 aaKnown RBP23.59■■□□□ 1.37
COL9A3-210ENST00000472880 KBTBD13C9JR72 458 aa23.58■■□□□ 1.37
COL9A3-210ENST00000472880 ATN1P54259 1190 aaPredicted RBP23.58■■□□□ 1.37
COL9A3-210ENST00000472880 ANO1Q5XXA6 986 aa23.58■■□□□ 1.37
COL9A3-210ENST00000472880 TDHQ8IZJ6 230 aa23.58■■□□□ 1.37
COL9A3-210ENST00000472880 ZNF444Q8N0Y2 327 aaPredicted RBP23.58■■□□□ 1.37
COL9A3-210ENST00000472880 PI4K2BQ8TCG2 481 aa23.58■■□□□ 1.37
COL9A3-210ENST00000472880 NUP88Q99567 741 aaPredicted RBP23.58■■□□□ 1.37
COL9A3-210ENST00000472880 SLF1Q9BQI6 1058 aa23.58■■□□□ 1.37
COL9A3-210ENST00000472880 NACAP1Q9BZK3 213 aa23.58■■□□□ 1.37
COL9A3-210ENST00000472880 ZNF214Q9UL59 606 aaPredicted RBP23.58■■□□□ 1.37
COL9A3-210ENST00000472880 SZT2Q5T011 3432 aa23.57■■□□□ 1.36
COL9A3-210ENST00000472880 PATL2C9JE40 543 aaKnown RBP23.57■■□□□ 1.36
COL9A3-210ENST00000472880 F5H6K3 240 aa23.57■■□□□ 1.36
COL9A3-210ENST00000472880 PRDM1O75626 825 aa23.57■■□□□ 1.36
COL9A3-210ENST00000472880 NDUFB10O96000 172 aa23.57■■□□□ 1.36
COL9A3-210ENST00000472880 KLRC3Q07444 240 aa23.57■■□□□ 1.36
COL9A3-210ENST00000472880 GJC2Q5T442 439 aaPredicted RBP23.57■■□□□ 1.36
COL9A3-210ENST00000472880 REPS2Q8NFH8 660 aa23.57■■□□□ 1.36
COL9A3-210ENST00000472880 MYH4Q9Y623 1939 aa23.57■■□□□ 1.36
COL9A3-210ENST00000472880 MYCNP04198 464 aaPredicted RBP23.56■■□□□ 1.36
COL9A3-210ENST00000472880 PGK2P07205 417 aa23.56■■□□□ 1.36
COL9A3-210ENST00000472880 MX1P20591 662 aa23.56■■□□□ 1.36
COL9A3-210ENST00000472880 RRP1P56182 461 aaKnown RBP23.56■■□□□ 1.36
COL9A3-210ENST00000472880 PRAMEF19Q5SWL8 479 aa23.56■■□□□ 1.36
COL9A3-210ENST00000472880 IFNL3Q8IZI9 196 aa23.56■■□□□ 1.36
COL9A3-210ENST00000472880 OTUD7AQ8TE49 926 aaPredicted RBP23.56■■□□□ 1.36
COL9A3-210ENST00000472880 CLIP2Q9UDT6 1046 aa23.56■■□□□ 1.36
COL9A3-210ENST00000472880 ZBTB47Q9UFB7 747 aaPredicted RBP23.56■■□□□ 1.36
COL9A3-210ENST00000472880 PLXNA1Q9UIW2 1896 aa23.56■■□□□ 1.36
COL9A3-210ENST00000472880 ZNFX1Q9P2E3 1918 aaKnown RBP23.55■■□□□ 1.36
COL9A3-210ENST00000472880 IGKV6D-41A0A0C4DH26 115 aa23.55■■□□□ 1.36
COL9A3-210ENST00000472880 RTP1P59025 263 aa23.55■■□□□ 1.36
COL9A3-210ENST00000472880 MDM2Q00987 491 aaPredicted RBP23.55■■□□□ 1.36
COL9A3-210ENST00000472880 SEC62Q99442 399 aaKnown RBP23.55■■□□□ 1.36
COL9A3-210ENST00000472880 TEX13BQ9BXU2 312 aa23.55■■□□□ 1.36
COL9A3-210ENST00000472880 NAPBQ9H115 298 aa23.55■■□□□ 1.36
COL9A3-210ENST00000472880 NRBP1Q9UHY1 535 aa23.55■■□□□ 1.36
COL9A3-210ENST00000472880 SLC3A2P08195 630 aaKnown RBP23.54■■□□□ 1.36
COL9A3-210ENST00000472880 PDE4BQ07343 736 aa23.54■■□□□ 1.36
COL9A3-210ENST00000472880 SNRNP48Q6IEG0 339 aaKnown RBP23.54■■□□□ 1.36
COL9A3-210ENST00000472880 PRPF38AQ8NAV1 312 aaKnown RBP23.54■■□□□ 1.36
COL9A3-210ENST00000472880 CEP95Q96GE4 821 aa23.54■■□□□ 1.36
COL9A3-210ENST00000472880 LBHD1Q9BQE6 289 aaPredicted RBP23.54■■□□□ 1.36
COL9A3-210ENST00000472880 PRKAG2Q9UGJ0 569 aa23.54■■□□□ 1.36
COL9A3-210ENST00000472880 DIS3Q9Y2L1 958 aaKnown RBP23.54■■□□□ 1.36
COL9A3-210ENST00000472880 CTDP1Q9Y5B0 961 aaPredicted RBP23.54■■□□□ 1.36
COL9A3-210ENST00000472880 PLIN4Q96Q06 1357 aa23.53■■□□□ 1.36
COL9A3-210ENST00000472880 ZNF792Q3KQV3 632 aa23.53■■□□□ 1.36
COL9A3-210ENST00000472880 LRIT3Q3SXY7 679 aa23.53■■□□□ 1.36
COL9A3-210ENST00000472880 FAM47AQ5JRC9 791 aa23.53■■□□□ 1.36
COL9A3-210ENST00000472880 ZMYM1Q5SVZ6 1142 aa23.53■■□□□ 1.36
COL9A3-210ENST00000472880 TINF2Q9BSI4 451 aa23.53■■□□□ 1.36
COL9A3-210ENST00000472880 MTMR4Q9NYA4 1195 aa23.53■■□□□ 1.36
COL9A3-210ENST00000472880 ATP11BQ9Y2G3 1177 aa23.53■■□□□ 1.36
COL9A3-210ENST00000472880 TTLL1O95922 423 aa23.52■■□□□ 1.36
COL9A3-210ENST00000472880 TSPY3P0CV98 308 aa23.52■■□□□ 1.36
COL9A3-210ENST00000472880 TSPY8P0CW00 308 aa23.52■■□□□ 1.36
COL9A3-210ENST00000472880 LRRC47Q8N1G4 583 aaKnown RBP23.52■■□□□ 1.36
COL9A3-210ENST00000472880 SYNPO2Q9UMS6 1093 aa23.52■■□□□ 1.36
COL9A3-210ENST00000472880 ZBED4O75132 1171 aa23.51■■□□□ 1.35
COL9A3-210ENST00000472880 RARBP10826 455 aa23.51■■□□□ 1.35
COL9A3-210ENST00000472880 PPARAQ07869 468 aa23.51■■□□□ 1.35
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms