RNA–Protein interactions for RNA: ENST00000471947.1

CCDC88A-211, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best)

Gene CCDC88A, Length 3,713 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-211ENST00000471947 CHMP2AO43633 222 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 PTPREP23469 700 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 TMEM60Q9H2L4 133 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 FOXP1Q9H334 677 aaPredicted RBP15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 MMRN2Q9H8L6 949 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 FBXO2Q9UK22 296 aaPredicted RBP15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 DAGLAQ9Y4D2 1042 aa15.56■□□□□ 0.08
CCDC88A-211ENST00000471947 RESP18Q5W5W9 173 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 IQUBQ8NA54 791 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 ANKRD20A12PQ8NF67 263 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 TEX33O43247 280 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 SORBS3O60504 671 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 NAP1L1P55209 391 aaKnown RBP15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 LRRC41Q15345 812 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L15C9J2P7 530 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L13C9JLJ4 530 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L11C9JVI0 530 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L18D6R9N7 530 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L22D6RA61 530 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L17D6RBQ6 530 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L19D6RCP7 530 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L20D6RJB6 530 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 U2AF2P26368 475 aaKnown RBP eCLIP15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 SLC1A4P43007 532 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L24Q0WX57 530 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 SF3B2Q13435 895 aaKnown RBP15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L6PQ6QN14 398 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 DRC1Q96MC2 740 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 KANSL2Q9H9L4 492 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 HOMER2Q9NSB8 354 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 DISP2A7MBM2 1401 aa15.55■□□□□ 0.08
CCDC88A-211ENST00000471947 PRPF3O43395 683 aaKnown RBP15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 TPM1P09493 284 aa15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 ARID5AQ03989 594 aa15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 PLS1Q14651 629 aa15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 MAEAQ7L5Y9 396 aa15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 TBCKQ8TEA7 893 aa15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 MAP3K14Q99558 947 aa15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 UTP3Q9NQZ2 479 aaKnown RBP eCLIP15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 RASA1P20936 1047 aa15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 PPP4R3BQ5MIZ7 849 aa15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 TSR1Q2NL82 804 aaKnown RBP15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 CCDC174Q6PII3 467 aa15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 TEKT1Q969V4 418 aa15.54■□□□□ 0.08
CCDC88A-211ENST00000471947 POTEMA6NI47 508 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 PPP6R2O75170 966 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 PLA2G4DQ86XP0 818 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 SLF2Q8IX21 1173 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 CPXCR1Q8N123 301 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 LARGE2Q8N3Y3 721 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 C6orf50Q9HD87 102 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 SLC39A2Q9NP94 309 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 MAGEC2Q9UBF1 373 aaPredicted RBP15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 ZBTB21Q9ULJ3 1066 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 FLT1P17948 1338 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 CBFA2T2O43439 604 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 ZBTB7AO95365 584 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 MTIF2P46199 727 aaKnown RBP15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 EVCP57679 992 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 SP4Q02446 784 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 NELFCDQ8IXH7 590 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 SHISA4Q96DD7 197 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 DDX4Q9NQI0 724 aaKnown RBP15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 BBOX1O75936 387 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 HOXA13P31271 388 aaPredicted RBP15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 SLC10A5Q5PT55 438 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 RC3H1Q5TC82 1133 aaKnown RBP15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 PDCL2Q8N4E4 241 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 PAGE5Q96GU1 130 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 FEZ1Q99689 392 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 DACH1Q9UI36 760 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 SERPINB13Q9UIV8 391 aa15.53■□□□□ 0.08
CCDC88A-211ENST00000471947 COL1A1P02452 1464 aaPredicted RBP15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 DDX39AO00148 427 aaKnown RBP15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 CALML3P27482 149 aa15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 PDE4DQ08499 809 aa15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 MTF1Q14872 753 aa15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 GLIPR1L2Q4G1C9 344 aa15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 TEX35Q5T0J7 233 aa15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 KIF18AQ8NI77 898 aa15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 IRX2Q9BZI1 471 aaPredicted RBP15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 EPC1Q9H2F5 836 aa15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 GJA3Q9Y6H8 435 aa15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 SYNRGQ9UMZ2 1314 aa15.52■□□□□ 0.08
CCDC88A-211ENST00000471947 USP17L10C9JJH3 530 aa15.52■□□□□ 0.07
CCDC88A-211ENST00000471947 CYP4A11Q02928 519 aa15.52■□□□□ 0.07
CCDC88A-211ENST00000471947 REXO1Q8N1G1 1221 aaKnown RBP15.52■□□□□ 0.07
CCDC88A-211ENST00000471947 IGSF22Q8N9C0 903 aa15.52■□□□□ 0.07
CCDC88A-211ENST00000471947 ZNF277Q9NRM2 450 aaPredicted RBP15.52■□□□□ 0.07
CCDC88A-211ENST00000471947 SRPRBQ9Y5M8 271 aaKnown RBP15.52■□□□□ 0.07
CCDC88A-211ENST00000471947 CNTNAP5Q8WYK1 1306 aa15.52■□□□□ 0.07
CCDC88A-211ENST00000471947 UBXN1Q04323 297 aa15.52■□□□□ 0.07
CCDC88A-211ENST00000471947 RCSD1Q6JBY9 416 aa15.52■□□□□ 0.07
CCDC88A-211ENST00000471947 NLGN1Q8N2Q7 840 aa15.52■□□□□ 0.07
CCDC88A-211ENST00000471947 CYTH3O43739 400 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 TDP2O95551 362 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 SEPT2Q15019 361 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 DDAH1O94760 285 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 BMP6P22004 513 aa15.51■□□□□ 0.07
CCDC88A-211ENST00000471947 EZH2Q15910 746 aaKnown RBP15.51■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms