RNA–Protein interactions for RNA: ENST00000463041.1

PTPRF-210, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 3

Gene PTPRF, Length 298 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-210ENST00000463041 NBPF3Q9H094 633 aa8.68□□□□□ -1.02
PTPRF-210ENST00000463041 NAPBQ9H115 298 aa8.68□□□□□ -1.02
PTPRF-210ENST00000463041 EPB41L4AQ9HCS5 686 aaPredicted RBP8.68□□□□□ -1.02
PTPRF-210ENST00000463041 HELLSQ9NRZ9 838 aa8.68□□□□□ -1.02
PTPRF-210ENST00000463041 CLIP2Q9UDT6 1046 aa8.68□□□□□ -1.02
PTPRF-210ENST00000463041 SYNPO2Q9UMS6 1093 aa8.68□□□□□ -1.02
PTPRF-210ENST00000463041 ROBO3Q96MS0 1386 aa8.68□□□□□ -1.02
PTPRF-210ENST00000463041 IGKV6D-41A0A0C4DH26 115 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 VWA5AO00534 786 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 EVI5O60447 810 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 MSCO60682 206 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 IGHA2P01877 340 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 COL11A1P12107 1806 aaPredicted RBP8.67□□□□□ -1.02
PTPRF-210ENST00000463041 FCER1AP12319 257 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 ADORA2AP29274 412 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 COPB2P35606 906 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 STAT3P40763 770 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 TMEM132BQ14DG7 1078 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 ALX1Q15699 326 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 PARP14Q460N5 1801 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 PPP4R3BQ5MIZ7 849 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 OLFML2BQ68BL8 750 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 LHX8Q68G74 356 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 NCAPG2Q86XI2 1143 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 SMC5Q8IY18 1101 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 STK11IPQ8N1F8 1099 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 PRPF38AQ8NAV1 312 aaKnown RBP8.67□□□□□ -1.02
PTPRF-210ENST00000463041 NEDD1Q8NHV4 660 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 NPLOC4Q8TAT6 608 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 GREB1LQ9C091 1923 aaPredicted RBP8.67□□□□□ -1.02
PTPRF-210ENST00000463041 MTMR4Q9NYA4 1195 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 PPP1R9AQ9ULJ8 1098 aa8.67□□□□□ -1.02
PTPRF-210ENST00000463041 COLQQ9Y215 455 aaPredicted RBP8.67□□□□□ -1.02
PTPRF-210ENST00000463041 RAD21O60216 631 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 COBLO75128 1261 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 PRDM1O75626 825 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 TTLL1O95922 423 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 TSPY3P0CV98 308 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 TSPY8P0CW00 308 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 CCND3P30281 292 aaPredicted RBP8.66□□□□□ -1.02
PTPRF-210ENST00000463041 MNX1P50219 401 aaPredicted RBP8.66□□□□□ -1.02
PTPRF-210ENST00000463041 TFAP4Q01664 338 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 PPARAQ07869 468 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 MCMDC2Q4G0Z9 681 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 FAM83BQ5T0W9 1011 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 SAMD1Q6SPF0 538 aaPredicted RBP8.66□□□□□ -1.02
PTPRF-210ENST00000463041 RIOX2Q8IUF8 465 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 LNPKQ9C0E8 428 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 C11orf49Q9H6J7 331 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 FBXO28Q9NVF7 368 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 FLRT1Q9NZU1 646 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 ANAPC4Q9UJX5 808 aa8.66□□□□□ -1.02
PTPRF-210ENST00000463041 DIS3Q9Y2L1 958 aaKnown RBP8.66□□□□□ -1.02
PTPRF-210ENST00000463041 RANBP2P49792 3224 aaKnown RBP8.65□□□□□ -1.02
PTPRF-210ENST00000463041 TRIM6-TRIM34B2RNG4 842 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 ATP2A1O14983 1001 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 ZBED4O75132 1171 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 NDUFB10O96000 172 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 IGHDP01880 384 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 FDX1P10109 184 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 CNGA1P29973 690 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 CYP2C19P33261 490 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 NUCB1Q02818 461 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 B4GALNT3Q6L9W6 998 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 CHD1LQ86WJ1 897 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 GMCL1P1Q8NEA9 526 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 REPS2Q8NFH8 660 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 EXOC6Q8TAG9 804 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 DIS3LQ8TF46 1054 aaKnown RBP8.65□□□□□ -1.02
PTPRF-210ENST00000463041 CEP95Q96GE4 821 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 SLF1Q9BQI6 1058 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 OSBPL3Q9H4L5 887 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 DDX20Q9UHI6 824 aaKnown RBP8.65□□□□□ -1.02
PTPRF-210ENST00000463041 FEM1BQ9UK73 627 aa8.65□□□□□ -1.02
PTPRF-210ENST00000463041 CTDP1Q9Y5B0 961 aaPredicted RBP8.65□□□□□ -1.02
PTPRF-210ENST00000463041 PLXNA1Q9UIW2 1896 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 FGAP02671 866 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 FGRP09769 529 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 COL6A1P12109 1028 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 MFAP1P55081 439 aaKnown RBP8.64□□□□□ -1.03
PTPRF-210ENST00000463041 KCTD2Q14681 263 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 FAM47AQ5JRC9 791 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 SLFN13Q68D06 897 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 CCDC129Q6ZRS4 1044 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 PLEKHM2Q8IWE5 1019 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 ARRDC4Q8NCT1 418 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 CHURC1Q8WUH1 139 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 RILPL2Q969X0 211 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 MMP19Q99542 508 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 NUP88Q99567 741 aaPredicted RBP8.64□□□□□ -1.03
PTPRF-210ENST00000463041 TEX13BQ9BXU2 312 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 PCDH10Q9P2E7 1040 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 NRBP1Q9UHY1 535 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 ZNF214Q9UL59 606 aaPredicted RBP8.64□□□□□ -1.03
PTPRF-210ENST00000463041 DDX52Q9Y2R4 599 aaKnown RBP eCLIP8.64□□□□□ -1.03
PTPRF-210ENST00000463041 SUPT16HQ9Y5B9 1047 aaKnown RBP8.64□□□□□ -1.03
PTPRF-210ENST00000463041 ALPK3Q96L96 1907 aa8.64□□□□□ -1.03
PTPRF-210ENST00000463041 A0A0G2JMZ2 1700 aa8.63□□□□□ -1.03
PTPRF-210ENST00000463041 PLIN4Q96Q06 1357 aa8.63□□□□□ -1.03
PTPRF-210ENST00000463041 TSPY2A6NKD2 308 aa8.63□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 93.8 ms