RNA–Protein interactions for RNA: ENST00000422245.5

SQSTM1-203, Transcript of sequestosome 1, humanhuman

TSL 4

Gene SQSTM1, Length 628 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-203ENST00000422245 SAMD1Q6SPF0 538 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-203ENST00000422245 PI4K2BQ8TCG2 481 aa13.81□□□□□ -0.2
SQSTM1-203ENST00000422245 GNL3Q9BVP2 549 aaKnown RBP eCLIP13.81□□□□□ -0.2
SQSTM1-203ENST00000422245 NYAP2Q9P242 653 aa13.81□□□□□ -0.2
SQSTM1-203ENST00000422245 PPP1R9AQ9ULJ8 1098 aa13.81□□□□□ -0.2
SQSTM1-203ENST00000422245 ZMYND8Q9ULU4 1186 aaPredicted RBP13.81□□□□□ -0.2
SQSTM1-203ENST00000422245 ADAMTS5Q9UNA0 930 aa13.81□□□□□ -0.2
SQSTM1-203ENST00000422245 PCDHB15Q9Y5E8 787 aa13.81□□□□□ -0.2
SQSTM1-203ENST00000422245 MINDY4BA8MYZ0 360 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 M0R2C6 588 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 RAD21O60216 631 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 FCER1AP12319 257 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 MX1P20591 662 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 CNGA1P29973 690 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 TMEM132BQ14DG7 1078 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 FAM83BQ5T0W9 1011 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 GDF15Q99988 308 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 FSD1Q9BTV5 496 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 NACAP1Q9BZK3 213 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 FBXO28Q9NVF7 368 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 STAP2Q9UGK3 403 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 SYNPO2Q9UMS6 1093 aa13.8□□□□□ -0.2
SQSTM1-203ENST00000422245 DNM1LO00429 736 aa13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 VWA5AO00534 786 aa13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 COBLO75128 1261 aa13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 APPP05067 770 aa13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 BMP8BP34820 402 aa13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 RIOX2Q8IUF8 465 aa13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 TRPV1Q8NER1 839 aa13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 SLF1Q9BQI6 1058 aa13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 ZBTB47Q9UFB7 747 aaPredicted RBP13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 NRBP1Q9UHY1 535 aa13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 PLIN4Q96Q06 1357 aa13.79□□□□□ -0.2
SQSTM1-203ENST00000422245 MYH4Q9Y623 1939 aa13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 IGKV6D-41A0A0C4DH26 115 aa13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 PATL2C9JE40 543 aaKnown RBP13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 SEPT4O43236 478 aa13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 NDUFB10O96000 172 aa13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 STAT3P40763 770 aa13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 KCTD2Q14681 263 aa13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 LRRC26Q2I0M4 334 aa13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 REPS2Q8NFH8 660 aa13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 OTUD7AQ8TE49 926 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 MAML3Q96JK9 1138 aa13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 MMP19Q99542 508 aa13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 ZNF214Q9UL59 606 aaPredicted RBP13.78□□□□□ -0.2
SQSTM1-203ENST00000422245 PRDM1O75626 825 aa13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 SLC3A2P08195 630 aaKnown RBP13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 SYN1P17600 705 aa13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 MAGEA10P43363 369 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 ZMYM1Q5SVZ6 1142 aa13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 IFNL3Q8IZI9 196 aa13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 ZNF444Q8N0Y2 327 aaPredicted RBP13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 STK11IPQ8N1F8 1099 aa13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 ARRDC4Q8NCT1 418 aa13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 TEX13BQ9BXU2 312 aa13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 NAPBQ9H115 298 aa13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 ZNFX1Q9P2E3 1918 aaKnown RBP13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 PLXNA1Q9UIW2 1896 aa13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 DIS3Q9Y2L1 958 aaKnown RBP13.77□□□□□ -0.21
SQSTM1-203ENST00000422245 SALL3Q9BXA9 1300 aa13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 KBTBD13C9JR72 458 aa13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 F5H6K3 240 aa13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 TTLL1O95922 423 aa13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 PDE4BQ07343 736 aa13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 KLRC3Q07444 240 aa13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 GMCL1P1Q8NEA9 526 aa13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 CEP95Q96GE4 821 aa13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 NUP88Q99567 741 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 SENP6Q9GZR1 1112 aaPredicted RBP13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 MTMR4Q9NYA4 1195 aa13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 CLIP2Q9UDT6 1046 aa13.76□□□□□ -0.21
SQSTM1-203ENST00000422245 ATP2A1O14983 1001 aa13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 TSPY3P0CV98 308 aa13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 TSPY8P0CW00 308 aa13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 PPARAQ07869 468 aa13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 HDAC1Q13547 482 aaPredicted RBP13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 PPP4R3BQ5MIZ7 849 aa13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 SNRNP48Q6IEG0 339 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 PRPF38AQ8NAV1 312 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 NEDD1Q8NHV4 660 aa13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 MKL1Q969V6 931 aa13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 CRBNQ96SW2 442 aa13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 SEC62Q99442 399 aaKnown RBP13.75□□□□□ -0.21
SQSTM1-203ENST00000422245 SOX1O00570 391 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 ZBED4O75132 1171 aa13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 PGK2P07205 417 aa13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 ZNF792Q3KQV3 632 aa13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 TDHQ8IZJ6 230 aa13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 LRRC47Q8N1G4 583 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 MSL3Q8N5Y2 521 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 EVI5LQ96CN4 794 aa13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 TINF2Q9BSI4 451 aa13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 UBE2OQ9C0C9 1292 aaKnown RBP13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 FEM1BQ9UK73 627 aa13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 CTDP1Q9Y5B0 961 aaPredicted RBP13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 SZT2Q5T011 3432 aa13.74□□□□□ -0.21
SQSTM1-203ENST00000422245 RARBP10826 455 aa13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 ATN1P54259 1190 aaPredicted RBP13.73□□□□□ -0.21
SQSTM1-203ENST00000422245 OAZ1P54368 228 aa13.73□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms