RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 KIF28PB7ZC32 967 aa17.04■□□□□ 0.32
USP4-203ENST00000415188 GPR25O00155 361 aa17.04■□□□□ 0.32
USP4-203ENST00000415188 POLR3DP05423 398 aaPredicted RBP17.04■□□□□ 0.32
USP4-203ENST00000415188 U2AF2P26368 475 aaKnown RBP eCLIP17.04■□□□□ 0.32
USP4-203ENST00000415188 CDC27P30260 824 aa17.04■□□□□ 0.32
USP4-203ENST00000415188 TNNI2P48788 182 aa17.04■□□□□ 0.32
USP4-203ENST00000415188 ANKRD13AQ8IZ07 590 aa17.04■□□□□ 0.32
USP4-203ENST00000415188 MRFAP1L1Q96HT8 127 aa17.04■□□□□ 0.32
USP4-203ENST00000415188 BPIFA3Q9BQP9 254 aa17.04■□□□□ 0.32
USP4-203ENST00000415188 MRIQ9BWK5 157 aa17.04■□□□□ 0.32
USP4-203ENST00000415188 ELP3Q9H9T3 547 aa17.04■□□□□ 0.32
USP4-203ENST00000415188 ZSWIM5Q9P217 1185 aa17.04■□□□□ 0.32
USP4-203ENST00000415188 OTOFQ9HC10 1997 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 FAM237AA0A1B0GTK4 181 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 UNCXA6NJT0 531 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 IGF2BP3O00425 579 aaKnown RBP eCLIP17.03■□□□□ 0.32
USP4-203ENST00000415188 CYP7A1P22680 504 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 CTDSPL2Q05D32 466 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 GNL2Q13823 731 aaKnown RBP17.03■□□□□ 0.32
USP4-203ENST00000415188 WTAPQ15007 396 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 RAB11FIP4Q86YS3 637 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 IFNL1Q8IU54 200 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 TRIM22Q8IYM9 498 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 KIAA1524Q8TCG1 905 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 PRIMPOLQ96LW4 560 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 SDF4Q9BRK5 362 aa17.03■□□□□ 0.32
USP4-203ENST00000415188 FAM217BQ9NTX9 383 aaPredicted RBP17.03■□□□□ 0.32
USP4-203ENST00000415188 MAGEB6P1A0A0J9YX57 407 aa17.02■□□□□ 0.32
USP4-203ENST00000415188 PPFIA3O75145 1194 aa17.02■□□□□ 0.32
USP4-203ENST00000415188 PRDX5P30044 214 aa17.02■□□□□ 0.32
USP4-203ENST00000415188 PPARAQ07869 468 aa17.02■□□□□ 0.32
USP4-203ENST00000415188 DIXDC1Q155Q3 683 aa17.02■□□□□ 0.32
USP4-203ENST00000415188 ZRSR1Q15695 479 aaKnown RBP17.02■□□□□ 0.32
USP4-203ENST00000415188 RTN1Q16799 776 aa17.02■□□□□ 0.32
USP4-203ENST00000415188 AXDND1Q5T1B0 1012 aaPredicted RBP17.02■□□□□ 0.32
USP4-203ENST00000415188 HHIPL2Q6UWX4 724 aa17.02■□□□□ 0.32
USP4-203ENST00000415188 PPP1R3FQ6ZSY5 799 aaPredicted RBP17.02■□□□□ 0.32
USP4-203ENST00000415188 CNKSR2Q8WXI2 1034 aa17.02■□□□□ 0.32
USP4-203ENST00000415188 TMOD2Q9NZR1 351 aa17.02■□□□□ 0.32
USP4-203ENST00000415188 MYH6P13533 1939 aa17.02■□□□□ 0.31
USP4-203ENST00000415188 LAMB1P07942 1786 aa17.01■□□□□ 0.31
USP4-203ENST00000415188 BECN2A8MW95 431 aa17.01■□□□□ 0.31
USP4-203ENST00000415188 NEMFO60524 1076 aa17.01■□□□□ 0.31
USP4-203ENST00000415188 NDUFA8P51970 172 aa17.01■□□□□ 0.31
USP4-203ENST00000415188 SAFBQ15424 915 aaKnown RBP eCLIP17.01■□□□□ 0.31
USP4-203ENST00000415188 C11orf57Q6ZUT1 292 aaPredicted RBP17.01■□□□□ 0.31
USP4-203ENST00000415188 OPTNQ96CV9 577 aa17.01■□□□□ 0.31
USP4-203ENST00000415188 CFHR5Q9BXR6 569 aa17.01■□□□□ 0.31
USP4-203ENST00000415188 KCNF1Q9H3M0 494 aa17.01■□□□□ 0.31
USP4-203ENST00000415188 KIAA1468Q9P260 1216 aa17.01■□□□□ 0.31
USP4-203ENST00000415188 DAGLAQ9Y4D2 1042 aa17.01■□□□□ 0.31
USP4-203ENST00000415188 A0A1B0GVL5 298 aa17■□□□□ 0.31
USP4-203ENST00000415188 RANBP6O60518 1105 aaKnown RBP17■□□□□ 0.31
USP4-203ENST00000415188 NT5C2P49902 561 aa17■□□□□ 0.31
USP4-203ENST00000415188 INHBEP58166 350 aa17■□□□□ 0.31
USP4-203ENST00000415188 MAP3K9P80192 1104 aa17■□□□□ 0.31
USP4-203ENST00000415188 VGLL4Q14135 290 aa17■□□□□ 0.31
USP4-203ENST00000415188 DRC7Q8IY82 874 aa17■□□□□ 0.31
USP4-203ENST00000415188 ELOA2Q8IYF1 753 aaPredicted RBP17■□□□□ 0.31
USP4-203ENST00000415188 SPC24Q8NBT2 197 aa17■□□□□ 0.31
USP4-203ENST00000415188 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17■□□□□ 0.31
USP4-203ENST00000415188 NKX2-3Q8TAU0 364 aa17■□□□□ 0.31
USP4-203ENST00000415188 ESR2Q92731 530 aa17■□□□□ 0.31
USP4-203ENST00000415188 ZNF830Q96NB3 372 aaPredicted RBP17■□□□□ 0.31
USP4-203ENST00000415188 SENP2Q9HC62 589 aa17■□□□□ 0.31
USP4-203ENST00000415188 EIF4ENIF1Q9NRA8 985 aaKnown RBP17■□□□□ 0.31
USP4-203ENST00000415188 RAI14Q9P0K7 980 aa17■□□□□ 0.31
USP4-203ENST00000415188 DYNC1I1O14576 645 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 PRKAB2O43741 272 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 CUTAO60888 179 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 FKTNO75072 461 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 DEXIO95424 95 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 ALDH1A1P00352 501 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 RGS19P49795 217 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 DHX8Q14562 1220 aaKnown RBP16.99■□□□□ 0.31
USP4-203ENST00000415188 PTPAQ15257 358 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 NOM1Q5C9Z4 860 aaKnown RBP16.99■□□□□ 0.31
USP4-203ENST00000415188 FKBP1CQ5VVH2 108 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 FAM83AQ86UY5 434 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 PTPN18Q99952 460 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 RIOK1Q9BRS2 568 aaKnown RBP16.99■□□□□ 0.31
USP4-203ENST00000415188 NOL10Q9BSC4 688 aaKnown RBP16.99■□□□□ 0.31
USP4-203ENST00000415188 UBAC1Q9BSL1 405 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.99■□□□□ 0.31
USP4-203ENST00000415188 SLC26A6Q9BXS9 759 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 TACC3Q9Y6A5 838 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 MORC2Q9Y6X9 1032 aaPredicted RBP16.99■□□□□ 0.31
USP4-203ENST00000415188 ZNF202O95125 648 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 LDHBP07195 334 aaKnown RBP16.99■□□□□ 0.31
USP4-203ENST00000415188 SLC3A2P08195 630 aaKnown RBP16.99■□□□□ 0.31
USP4-203ENST00000415188 PFKFB1P16118 471 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 NLRP12P59046 1061 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 CDC42EP5Q6NZY7 148 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 DHX40Q8IX18 779 aaKnown RBP16.99■□□□□ 0.31
USP4-203ENST00000415188 PHKBQ93100 1093 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 MAP3K14Q99558 947 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 FOXP1Q9H334 677 aaPredicted RBP16.99■□□□□ 0.31
USP4-203ENST00000415188 CLIP2Q9UDT6 1046 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 HPSEQ9Y251 543 aa16.99■□□□□ 0.31
USP4-203ENST00000415188 MMP1P03956 469 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 50.5 ms