RNA–Protein interactions for RNA: ENST00000372066.7

LDB3-204, Transcript of LIM domain binding 3, humanhuman

TSL 1 (best) BASIC

Gene LDB3, Length 1,598 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDB3-204ENST00000372066 CDC27P30260 824 aa16.24■□□□□ 0.19
LDB3-204ENST00000372066 GTF2A2P52657 109 aa16.24■□□□□ 0.19
LDB3-204ENST00000372066 CCL15Q16663 113 aa16.24■□□□□ 0.19
LDB3-204ENST00000372066 RTN1Q16799 776 aa16.24■□□□□ 0.19
LDB3-204ENST00000372066 ADGRA1Q86SQ6 560 aa16.24■□□□□ 0.19
LDB3-204ENST00000372066 DDX55Q8NHQ9 600 aaKnown RBP eCLIP16.24■□□□□ 0.19
LDB3-204ENST00000372066 BRI3BPQ8WY22 251 aa16.24■□□□□ 0.19
LDB3-204ENST00000372066 NSUN4Q96CB9 384 aaKnown RBP16.24■□□□□ 0.19
LDB3-204ENST00000372066 CRNKL1Q9BZJ0 848 aaKnown RBP16.24■□□□□ 0.19
LDB3-204ENST00000372066 ATP8A2Q9NTI2 1148 aa16.24■□□□□ 0.19
LDB3-204ENST00000372066 TMOD2Q9NZR1 351 aa16.24■□□□□ 0.19
LDB3-204ENST00000372066 NAV1Q8NEY1 1877 aa16.23■□□□□ 0.19
LDB3-204ENST00000372066 CERS3Q8IU89 383 aa16.23■□□□□ 0.19
LDB3-204ENST00000372066 OTUD5Q96G74 571 aa16.23■□□□□ 0.19
LDB3-204ENST00000372066 ZDHHC15Q96MV8 337 aa16.23■□□□□ 0.19
LDB3-204ENST00000372066 MRIQ9BWK5 157 aa16.23■□□□□ 0.19
LDB3-204ENST00000372066 ZFYVE28Q9HCC9 887 aa16.23■□□□□ 0.19
LDB3-204ENST00000372066 TOMM22Q9NS69 142 aa16.23■□□□□ 0.19
LDB3-204ENST00000372066 FAM217BQ9NTX9 383 aaPredicted RBP16.23■□□□□ 0.19
LDB3-204ENST00000372066 POTEFA5A3E0 1075 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 SPTLC2O15270 562 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 ZNF500O60304 480 aaPredicted RBP16.22■□□□□ 0.19
LDB3-204ENST00000372066 PTMAP06454 111 aaKnown RBP16.22■□□□□ 0.19
LDB3-204ENST00000372066 TPM3P06753 285 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 SLC3A2P08195 630 aaKnown RBP16.22■□□□□ 0.19
LDB3-204ENST00000372066 CALM1P0DP23 149 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 CALM2P0DP24 149 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 CALM3P0DP25 149 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 CEBPZQ03701 1054 aaKnown RBP16.22■□□□□ 0.19
LDB3-204ENST00000372066 SF3A1Q15459 793 aaKnown RBP16.22■□□□□ 0.19
LDB3-204ENST00000372066 TAF1CQ15572 869 aaPredicted RBP16.22■□□□□ 0.19
LDB3-204ENST00000372066 RRP12Q5JTH9 1297 aaKnown RBP16.22■□□□□ 0.19
LDB3-204ENST00000372066 ANO1Q5XXA6 986 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 KRT40Q6A162 431 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 FSIP1Q8NA03 581 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 ENGASEQ8NFI3 743 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 WDR66Q8TBY9 1149 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 ARPP21Q9UBL0 812 aaPredicted RBP16.22■□□□□ 0.19
LDB3-204ENST00000372066 USP25Q9UHP3 1055 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 TACC3Q9Y6A5 838 aa16.22■□□□□ 0.19
LDB3-204ENST00000372066 ORC4O43929 436 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 ADCY5O95622 1261 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 U2AF2P26368 475 aaKnown RBP eCLIP16.21■□□□□ 0.19
LDB3-204ENST00000372066 MECOMQ03112 1051 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 ARHGEF6Q15052 776 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 SEC23AQ15436 765 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 CAMK4Q16566 473 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 SBK1Q52WX2 424 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 APOBEC3HQ6NTF7 200 aaKnown RBP16.21■□□□□ 0.19
LDB3-204ENST00000372066 RAB11FIP4Q86YS3 637 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 ZNF654Q8IZM8 581 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 NKX2-3Q8TAU0 364 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 SDR42E1Q8WUS8 393 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 PCDHA7Q9UN72 937 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 SUGT1Q9Y2Z0 365 aa16.21■□□□□ 0.19
LDB3-204ENST00000372066 MINDY4BA8MYZ0 360 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 RANBP6O60518 1105 aaKnown RBP16.21■□□□□ 0.18
LDB3-204ENST00000372066 PPP6R2O75170 966 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 DEXIO95424 95 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 GSTO1P78417 241 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 CAP1Q01518 475 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 GNL2Q13823 731 aaKnown RBP16.21■□□□□ 0.18
LDB3-204ENST00000372066 SAFBQ15424 915 aaKnown RBP eCLIP16.21■□□□□ 0.18
LDB3-204ENST00000372066 STX1AQ16623 288 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 IQCA1Q86XH1 822 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 HOOK2Q96ED9 719 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 WRNIP1Q96S55 665 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 FTOQ9C0B1 505 aaKnown RBP eCLIP16.21■□□□□ 0.18
LDB3-204ENST00000372066 SENP2Q9HC62 589 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 RBM28Q9NW13 759 aaKnown RBP16.21■□□□□ 0.18
LDB3-204ENST00000372066 PCDH10Q9P2E7 1040 aa16.21■□□□□ 0.18
LDB3-204ENST00000372066 TNKSO95271 1327 aa16.2■□□□□ 0.18
LDB3-204ENST00000372066 CDK5RAP2Q96SN8 1893 aa16.2■□□□□ 0.18
LDB3-204ENST00000372066 SPDYE5A6NIY4 337 aa16.2■□□□□ 0.18
LDB3-204ENST00000372066 WDHD1O75717 1129 aaPredicted RBP16.2■□□□□ 0.18
LDB3-204ENST00000372066 SNW1Q13573 536 aaKnown RBP16.2■□□□□ 0.18
LDB3-204ENST00000372066 SLC39A14Q15043 492 aa16.2■□□□□ 0.18
LDB3-204ENST00000372066 ANO6Q4KMQ2 910 aa16.2■□□□□ 0.18
LDB3-204ENST00000372066 HHIPL2Q6UWX4 724 aa16.2■□□□□ 0.18
LDB3-204ENST00000372066 FAM83AQ86UY5 434 aa16.2■□□□□ 0.18
LDB3-204ENST00000372066 ERO1BQ86YB8 467 aa16.2■□□□□ 0.18
LDB3-204ENST00000372066 CKAP2LQ8IYA6 745 aa16.2■□□□□ 0.18
LDB3-204ENST00000372066 ZKSCAN4Q969J2 545 aaPredicted RBP16.2■□□□□ 0.18
LDB3-204ENST00000372066 SLC26A6Q9BXS9 759 aa16.2■□□□□ 0.18
LDB3-204ENST00000372066 RNF26Q9BY78 433 aaPredicted RBP16.2■□□□□ 0.18
LDB3-204ENST00000372066 GOLGA6L6A8MZA4 724 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 KIF28PB7ZC32 967 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 POLR3DP05423 398 aaPredicted RBP16.19■□□□□ 0.18
LDB3-204ENST00000372066 CETPP11597 493 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 DYNLL1P63167 89 aaKnown RBP16.19■□□□□ 0.18
LDB3-204ENST00000372066 FKBP1CQ5VVH2 108 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 DZIP1Q86YF9 867 aaKnown RBP16.19■□□□□ 0.18
LDB3-204ENST00000372066 FMR1NBQ8N0W7 255 aaPredicted RBP16.19■□□□□ 0.18
LDB3-204ENST00000372066 FANCBQ8NB91 859 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 ZNF384Q8TF68 577 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 PHKBQ93100 1093 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 ARMC5Q96C12 935 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 ZSCAN10Q96SZ4 725 aaPredicted RBP16.19■□□□□ 0.18
LDB3-204ENST00000372066 GOLPH3LQ9H4A5 285 aa16.19■□□□□ 0.18
LDB3-204ENST00000372066 INCENPQ9NQS7 918 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms