RNA–Protein interactions for RNA: ENST00000341307.6

RTN3-203, Transcript of reticulon 3, humanhuman

TSL 2 BASIC

Gene RTN3, Length 2,524 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-203ENST00000341307 CENPHQ9H3R5 247 aa13.33□□□□□ -0.28
RTN3-203ENST00000341307 SRP68Q9UHB9 627 aaKnown RBP13.33□□□□□ -0.28
RTN3-203ENST00000341307 ATF5Q9Y2D1 282 aaPredicted RBP13.33□□□□□ -0.28
RTN3-203ENST00000341307 MYH15Q9Y2K3 1946 aa13.33□□□□□ -0.28
RTN3-203ENST00000341307 AGPSO00116 658 aa13.33□□□□□ -0.28
RTN3-203ENST00000341307 KIAA0754O94854 1291 aa13.33□□□□□ -0.28
RTN3-203ENST00000341307 PRPHP41219 470 aa13.33□□□□□ -0.28
RTN3-203ENST00000341307 PTPN21Q16825 1174 aa13.33□□□□□ -0.28
RTN3-203ENST00000341307 KIF4BQ2VIQ3 1234 aa13.33□□□□□ -0.28
RTN3-203ENST00000341307 ERFEQ4G0M1 354 aa13.33□□□□□ -0.28
RTN3-203ENST00000341307 MYSM1Q5VVJ2 828 aa13.33□□□□□ -0.28
RTN3-203ENST00000341307 CCDC24Q8N4L8 307 aa13.33□□□□□ -0.28
RTN3-203ENST00000341307 DDX60Q8IY21 1712 aaKnown RBP13.32□□□□□ -0.28
RTN3-203ENST00000341307 WTIPA6NIX2 430 aaPredicted RBP13.32□□□□□ -0.28
RTN3-203ENST00000341307 FOXP2O15409 715 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 PPP1R12BO60237 982 aaPredicted RBP13.32□□□□□ -0.28
RTN3-203ENST00000341307 RPSAP08865 295 aaKnown RBP13.32□□□□□ -0.28
RTN3-203ENST00000341307 ATP1A3P13637 1013 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 GNGT1P63211 74 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 RESTQ13127 1097 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 SNCBQ16143 134 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 PARP10Q53GL7 1025 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 DNAJC14Q6Y2X3 702 aaPredicted RBP13.32□□□□□ -0.28
RTN3-203ENST00000341307 NFXL1Q6ZNB6 911 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 B4GALNT4Q76KP1 1039 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 CHST3Q7LGC8 479 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 MAGEC3Q8TD91 643 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 ARHGEF1Q92888 912 aaKnown RBP13.32□□□□□ -0.28
RTN3-203ENST00000341307 HSD3B7Q9H2F3 369 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 PIH1D3Q9NQM4 214 aaKnown RBP13.32□□□□□ -0.28
RTN3-203ENST00000341307 RTEL1Q9NZ71 1219 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 LMCD1Q9NZU5 365 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 EZRP15311 586 aaKnown RBP13.32□□□□□ -0.28
RTN3-203ENST00000341307 ARHGAP25P42331 645 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 HAND2P61296 217 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 E2F5Q15329 346 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 WDR93Q6P2C0 686 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 Q6ZUG5 572 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 CCDC13Q8IYE1 715 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 MRPL44Q9H9J2 332 aaKnown RBP13.32□□□□□ -0.28
RTN3-203ENST00000341307 PRDM16Q9HAZ2 1276 aa13.32□□□□□ -0.28
RTN3-203ENST00000341307 SPEF2Q9C093 1822 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 C4BP0C0L5 1744 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 IDH1O75874 414 aaKnown RBP13.31□□□□□ -0.28
RTN3-203ENST00000341307 PUM3Q15397 648 aaKnown RBP13.31□□□□□ -0.28
RTN3-203ENST00000341307 THEMIS2Q5TEJ8 643 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 TBC1D9BQ66K14 1250 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 RPUSD2Q8IZ73 545 aaKnown RBP13.31□□□□□ -0.28
RTN3-203ENST00000341307 DSCC1Q9BVC3 393 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 HOMER3Q9NSC5 361 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 TAF1LQ8IZX4 1826 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 GOLGA6CA6NDK9 693 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 GOLGA6DP0CG33 693 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 LMOD1P29536 600 aaPredicted RBP13.31□□□□□ -0.28
RTN3-203ENST00000341307 NAP1L1P55209 391 aaKnown RBP13.31□□□□□ -0.28
RTN3-203ENST00000341307 KRT32Q14532 448 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 PLCB4Q15147 1175 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 CCDC152Q4G0S7 254 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 YTHDF3Q7Z739 585 aaKnown RBP13.31□□□□□ -0.28
RTN3-203ENST00000341307 PARP9Q8IXQ6 854 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 NOA1Q8NC60 698 aaKnown RBP13.31□□□□□ -0.28
RTN3-203ENST00000341307 SLC39A2Q9NP94 309 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 GOLGA6AQ9NYA3 693 aa13.31□□□□□ -0.28
RTN3-203ENST00000341307 MROH5Q6ZUA9 1318 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 AKAP11Q9UKA4 1901 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 PPFIA2O75334 1257 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 FGFR2P21802 821 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 GBP2P32456 591 aaPredicted RBP13.3□□□□□ -0.28
RTN3-203ENST00000341307 CEBPZQ03701 1054 aaKnown RBP13.3□□□□□ -0.28
RTN3-203ENST00000341307 SLC9C2Q5TAH2 1124 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 VSTM4Q8IW00 320 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 LPIN2Q92539 896 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 BRF1Q92994 677 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 SH3GL2Q99962 352 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 DESI2Q9BSY9 194 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.3□□□□□ -0.28
RTN3-203ENST00000341307 ZNF652Q9Y2D9 606 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 RTCBQ9Y3I0 505 aaKnown RBP13.3□□□□□ -0.28
RTN3-203ENST00000341307 MYO5AQ9Y4I1 1855 aaKnown RBP13.3□□□□□ -0.28
RTN3-203ENST00000341307 LRP5O75197 1615 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 CICQ96RK0 1608 aaPredicted RBP13.3□□□□□ -0.28
RTN3-203ENST00000341307 TMEM232C9JQI7 657 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 E7EWF7 191 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 TUBB4BP68371 445 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 TPX2Q9ULW0 747 aaKnown RBP13.3□□□□□ -0.28
RTN3-203ENST00000341307 TAF1P21675 1872 aa13.3□□□□□ -0.28
RTN3-203ENST00000341307 PPFIA3O75145 1194 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 ADD1P35611 737 aaKnown RBP13.29□□□□□ -0.28
RTN3-203ENST00000341307 FAM160A1Q05DH4 1040 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 STIM1Q13586 685 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 CCDC73Q6ZRK6 1079 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 SPATS2Q86XZ4 545 aaKnown RBP13.29□□□□□ -0.28
RTN3-203ENST00000341307 APPBP2Q92624 585 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 FTOQ9C0B1 505 aaKnown RBP eCLIP13.29□□□□□ -0.28
RTN3-203ENST00000341307 WWC3Q9ULE0 1092 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 IQSEC3Q9UPP2 1182 aaPredicted RBP13.29□□□□□ -0.28
RTN3-203ENST00000341307 NDUFAB1O14561 156 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 GPAA1O43292 621 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 PFKFB2O60825 505 aa13.29□□□□□ -0.28
RTN3-203ENST00000341307 RPS6KA4O75676 772 aa13.29□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms