RNA–Protein interactions for RNA: YOL142W

RRP40, Transcript of Exosome non-catalytic core component, yeast

Gene RRP40, Length 723 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
RRP40	YOL142W	SSK22	P25390	1331 aa	Predicted RBP	5.35	□□□□□ -1.55
RRP40	YOL142W	CET1	O13297	549 aa	Predicted RBP	5.35	□□□□□ -1.55
RRP40	YOL142W	SES1	P07284	462 aa	Known RBP	5.35	□□□□□ -1.55
RRP40	YOL142W	PDE1	P22434	369 aa		5.35	□□□□□ -1.55
RRP40	YOL142W	RIT1	P23796	513 aa		5.35	□□□□□ -1.55
RRP40	YOL142W	MCM3	P24279	971 aa	Known RBP	5.35	□□□□□ -1.55
RRP40	YOL142W	VBA2	P38358	474 aa	Known RBP	5.35	□□□□□ -1.55
RRP40	YOL142W	ERC1	P38767	581 aa		5.35	□□□□□ -1.55
RRP40	YOL142W	SNM1	P40993	198 aa		5.35	□□□□□ -1.55
RRP40	YOL142W	YRB30	P53107	440 aa	Predicted RBP	5.35	□□□□□ -1.55
RRP40	YOL142W	ICT1	Q12385	394 aa		5.35	□□□□□ -1.55
RRP40	YOL142W	ADE3	P07245	946 aa	Known RBP	5.34	□□□□□ -1.55
RRP40	YOL142W	SWI4	P25302	1093 aa	Known RBP	5.34	□□□□□ -1.55
RRP40	YOL142W	SIP1	P32578	815 aa		5.34	□□□□□ -1.55
RRP40	YOL142W	RPF2	P36160	344 aa	Known RBP	5.34	□□□□□ -1.55
RRP40	YOL142W	SPC72	P39723	622 aa		5.34	□□□□□ -1.55
RRP40	YOL142W	YGL082W	P53155	381 aa		5.34	□□□□□ -1.55
RRP40	YOL142W	CPR6	P53691	371 aa	Known RBP	5.34	□□□□□ -1.55
RRP40	YOL142W	YPL108W	Q02872	168 aa	Predicted RBP	5.34	□□□□□ -1.55
RRP40	YOL142W	YPL191C	Q08930	360 aa		5.34	□□□□□ -1.55
RRP40	YOL142W	LYS21	Q12122	440 aa	Known RBP	5.34	□□□□□ -1.55
RRP40	YOL142W	RRP6	Q12149	733 aa	Known RBP	5.34	□□□□□ -1.55
RRP40	YOL142W	LPD1	P09624	499 aa	Known RBP	5.33	□□□□□ -1.56
RRP40	YOL142W	YMR085W	P0CF18	432 aa		5.33	□□□□□ -1.56
RRP40	YOL142W	MRP7	P12687	371 aa		5.33	□□□□□ -1.56
RRP40	YOL142W	MSH1	P25846	959 aa		5.33	□□□□□ -1.56
RRP40	YOL142W	ECM32	P32644	1121 aa	Known RBP	5.33	□□□□□ -1.56
RRP40	YOL142W	YHL041W	P38730	149 aa		5.33	□□□□□ -1.56
RRP40	YOL142W	CIN1	P40987	1014 aa		5.33	□□□□□ -1.56
RRP40	YOL142W	NOP2	P40991	618 aa	Known RBP	5.33	□□□□□ -1.56
RRP40	YOL142W	IRC7	P43623	340 aa		5.33	□□□□□ -1.56
RRP40	YOL142W	EAF6	P47128	113 aa		5.33	□□□□□ -1.56
RRP40	YOL142W	YAT1	P80235	687 aa		5.33	□□□□□ -1.56
RRP40	YOL142W	SNU56	Q03782	492 aa	Known RBP	5.33	□□□□□ -1.56
RRP40	YOL142W	ARA2	Q04212	335 aa		5.33	□□□□□ -1.56
RRP40	YOL142W	YOR389W	Q08912	624 aa		5.33	□□□□□ -1.56
RRP40	YOL142W	TMT1	P32643	299 aa		5.32	□□□□□ -1.56
RRP40	YOL142W	NPA3	P47122	385 aa		5.32	□□□□□ -1.56
RRP40	YOL142W	ATG21	Q02887	496 aa		5.32	□□□□□ -1.56
RRP40	YOL142W	CTI6	Q08923	506 aa		5.32	□□□□□ -1.56
RRP40	YOL142W	CRC1	Q12289	327 aa		5.32	□□□□□ -1.56
RRP40	YOL142W	MIS1	P09440	975 aa	Known RBP	5.31	□□□□□ -1.56
RRP40	YOL142W	SEC18	P18759	758 aa	Known RBP	5.31	□□□□□ -1.56
RRP40	YOL142W	SWC3	P31376	625 aa		5.31	□□□□□ -1.56
RRP40	YOL142W	RAD24	P32641	659 aa		5.31	□□□□□ -1.56
RRP40	YOL142W	NUP133	P36161	1157 aa		5.31	□□□□□ -1.56
RRP40	YOL142W	PFF1	P38244	976 aa		5.31	□□□□□ -1.56
RRP40	YOL142W	GAT1	P43574	510 aa		5.31	□□□□□ -1.56
RRP40	YOL142W	FCP1	Q03254	732 aa		5.31	□□□□□ -1.56
RRP40	YOL142W	YAP7	Q08182	245 aa		5.31	□□□□□ -1.56
RRP40	YOL142W	SUL2	Q12325	893 aa		5.31	□□□□□ -1.56
RRP40	YOL142W	SAC3	P46674	1301 aa		5.3	□□□□□ -1.56
RRP40	YOL142W	YAP1	P19880	650 aa	Known RBP	5.3	□□□□□ -1.56
RRP40	YOL142W	SMY1	P32364	656 aa	Known RBP	5.3	□□□□□ -1.56
RRP40	YOL142W	ARP2	P32381	391 aa	Known RBP	5.3	□□□□□ -1.56
RRP40	YOL142W	GSH1	P32477	678 aa		5.3	□□□□□ -1.56
RRP40	YOL142W	IMA1	P53051	589 aa		5.3	□□□□□ -1.56
RRP40	YOL142W	TAM41	P53230	385 aa		5.3	□□□□□ -1.56
RRP40	YOL142W	YGR079W	P53249	370 aa		5.3	□□□□□ -1.56
RRP40	YOL142W	CSI1	Q04368	295 aa		5.3	□□□□□ -1.56
RRP40	YOL142W	DIB1	Q06819	143 aa	Predicted RBP	5.3	□□□□□ -1.56
RRP40	YOL142W	RGT2	Q12300	763 aa		5.3	□□□□□ -1.56
RRP40	YOL142W	RPS19A	P07280	144 aa	Known RBP	5.29	□□□□□ -1.56
RRP40	YOL142W	RPS19B	P07281	144 aa	Predicted RBP	5.29	□□□□□ -1.56
RRP40	YOL142W	ILV2	P07342	687 aa	Known RBP	5.29	□□□□□ -1.56
RRP40	YOL142W	ILS1	P09436	1072 aa	Known RBP	5.29	□□□□□ -1.56
RRP40	YOL142W	PET122	P10355	254 aa		5.29	□□□□□ -1.56
RRP40	YOL142W	BIK1	P11709	440 aa		5.29	□□□□□ -1.56
RRP40	YOL142W	URK1	P27515	501 aa		5.29	□□□□□ -1.56
RRP40	YOL142W	ERV46	P39727	415 aa		5.29	□□□□□ -1.56
RRP40	YOL142W	UBP7	P40453	1071 aa		5.29	□□□□□ -1.56
RRP40	YOL142W	COX1	P00401	534 aa		5.28	□□□□□ -1.56
RRP40	YOL142W	DAL5	P15365	543 aa		5.28	□□□□□ -1.56
RRP40	YOL142W	PTC6	P25646	442 aa		5.28	□□□□□ -1.56
RRP40	YOL142W	COQ3	P27680	312 aa		5.28	□□□□□ -1.56
RRP40	YOL142W	YBR138C	P38277	524 aa		5.28	□□□□□ -1.56
RRP40	YOL142W	FUN12	P39730	1002 aa	Known RBP	5.28	□□□□□ -1.56
RRP40	YOL142W	SEC5	P89102	971 aa		5.28	□□□□□ -1.56
RRP40	YOL142W	ERO1	Q03103	563 aa		5.28	□□□□□ -1.56
RRP40	YOL142W	LAC1	P28496	418 aa		5.27	□□□□□ -1.57
RRP40	YOL142W	HES1	P35843	434 aa		5.27	□□□□□ -1.57
RRP40	YOL142W	PUG1	P40100	303 aa		5.27	□□□□□ -1.57
RRP40	YOL142W	YIL024C	P40543	189 aa		5.27	□□□□□ -1.57
RRP40	YOL142W	COP1	P53622	1201 aa	Known RBP	5.27	□□□□□ -1.57
RRP40	YOL142W	SYF1	Q04048	859 aa	Predicted RBP	5.27	□□□□□ -1.57
RRP40	YOL142W	GTB1	Q04924	702 aa		5.27	□□□□□ -1.57
RRP40	YOL142W	GEP3	Q08622	556 aa		5.27	□□□□□ -1.57
RRP40	YOL142W	LEA1	Q08963	238 aa	Predicted RBP	5.27	□□□□□ -1.57
RRP40	YOL142W	PHO81	P17442	1178 aa		5.26	□□□□□ -1.57
RRP40	YOL142W	FSH1	P38777	243 aa	Known RBP	5.26	□□□□□ -1.57
RRP40	YOL142W	BUD16	P39988	312 aa		5.26	□□□□□ -1.57
RRP40	YOL142W	JHD1	P40034	492 aa		5.26	□□□□□ -1.57
RRP40	YOL142W	MNT3	P40549	630 aa		5.26	□□□□□ -1.57
RRP40	YOL142W	SKP2	P42843	763 aa		5.26	□□□□□ -1.57
RRP40	YOL142W	UBX6	P47049	396 aa		5.26	□□□□□ -1.57
RRP40	YOL142W	MTG1	Q03151	367 aa	Predicted RBP	5.26	□□□□□ -1.57
RRP40	YOL142W	GET3	Q12154	354 aa	Known RBP	5.26	□□□□□ -1.57
RRP40	YOL142W	CLB4	P24871	460 aa		5.25	□□□□□ -1.57
RRP40	YOL142W	GCD7	P32502	381 aa	Predicted RBP	5.25	□□□□□ -1.57
RRP40	YOL142W	RPT2	P40327	437 aa	Known RBP	5.25	□□□□□ -1.57

Retrieved 100 of 5,963 RNA–protein pairs in 37 ms