RNA–Protein interactions for RNA: YLR336C

SGD1, Transcript of Essential nuclear protein, yeastyeast

Gene SGD1, Length 2,700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (RIP-Chip)
Gene Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score Detected Interaction
SGD1YLR336C CDC16P09798 840 aa2.29□□□□□ -2.04
SGD1YLR336C AAC3P18238 307 aa2.29□□□□□ -2.04
SGD1YLR336C URE2P23202 354 aaKnown RBP2.29□□□□□ -2.04
SGD1YLR336C GFD2P25370 566 aaKnown RBP2.29□□□□□ -2.04
SGD1YLR336C TFC3P34111 1160 aa2.29□□□□□ -2.04
SGD1YLR336C AAP1P37898 856 aaKnown RBP2.29□□□□□ -2.04
SGD1YLR336C BSC5P53755 489 aa2.29□□□□□ -2.04
SGD1YLR336C MUB1Q03162 620 aa2.29□□□□□ -2.04
SGD1YLR336C RSM28Q03430 361 aa2.29□□□□□ -2.04
SGD1YLR336C RIM13Q03792 727 aa2.29□□□□□ -2.04
SGD1YLR336C RAD30Q04049 632 aa2.29□□□□□ -2.04
SGD1YLR336C YOL159CQ08300 171 aa2.29□□□□□ -2.04
SGD1YLR336C SUI3P09064 285 aaKnown RBP2.28□□□□□ -2.04
SGD1YLR336C RPL19AP0CX82 189 aaKnown RBP2.28□□□□□ -2.04
SGD1YLR336C RPL19BP0CX83 189 aaPredicted RBP2.28□□□□□ -2.04
SGD1YLR336C PAH1P32567 862 aa2.28□□□□□ -2.04
SGD1YLR336C KTR3P38130 404 aaPredicted RBP2.28□□□□□ -2.04
SGD1YLR336C ASG1P40467 964 aa2.28□□□□□ -2.04
SGD1YLR336C LYS4P49367 693 aaPredicted RBP2.28□□□□□ -2.04
SGD1YLR336C GPA1P08539 472 aa2.28□□□□□ -2.04
SGD1YLR336C MDM10P18409 493 aa2.28□□□□□ -2.04
SGD1YLR336C YCR006CP25350 157 aa2.28□□□□□ -2.04
SGD1YLR336C SEC31P38968 1273 aaKnown RBP2.28□□□□□ -2.04
SGD1YLR336C ECM10P39987 644 aa2.28□□□□□ -2.04
SGD1YLR336C YFR020WP43600 232 aa2.28□□□□□ -2.04
SGD1YLR336C AAD10P47182 288 aa2.28□□□□□ -2.04
SGD1YLR336C ORC5P50874 479 aa2.28□□□□□ -2.04
SGD1YLR336C SEG1Q04279 960 aa2.28□□□□□ -2.04
SGD1YLR336C JHD1P40034 492 aa2.27□□□□□ -2.05
SGD1YLR336C TMA108P40462 946 aa2.27□□□□□ -2.05
SGD1YLR336C YJL107CP42947 387 aa2.27□□□□□ -2.05
SGD1YLR336C IDP3P53982 420 aaKnown RBP2.27□□□□□ -2.05
SGD1YLR336C ORM2Q06144 216 aa2.27□□□□□ -2.05
SGD1YLR336C IRC3Q06683 689 aa2.27□□□□□ -2.05
SGD1YLR336C RIX7Q07844 837 aaKnown RBP2.27□□□□□ -2.05
SGD1YLR336C GET3Q12154 354 aaKnown RBP2.27□□□□□ -2.05
SGD1YLR336C NBP2Q12163 236 aa2.27□□□□□ -2.05
SGD1YLR336C SKM1Q12469 655 aa2.27□□□□□ -2.05
SGD1YLR336C ENT1Q12518 454 aa2.27□□□□□ -2.05
SGD1YLR336C ILS1P09436 1072 aaKnown RBP2.27□□□□□ -2.05
SGD1YLR336C KAR3P17119 729 aa2.27□□□□□ -2.05
SGD1YLR336C LHS1P36016 881 aa2.27□□□□□ -2.05
SGD1YLR336C ARN1P38731 627 aa2.27□□□□□ -2.05
SGD1YLR336C VPS41P38959 992 aa2.27□□□□□ -2.05
SGD1YLR336C NOP16P40007 231 aaKnown RBP2.27□□□□□ -2.05
SGD1YLR336C XBP1P40489 647 aa2.27□□□□□ -2.05
SGD1YLR336C ARC1P46672 376 aaKnown RBP2.27□□□□□ -2.05
SGD1YLR336C CTK2P46962 323 aa2.27□□□□□ -2.05
SGD1YLR336C YLR455WQ06188 304 aa2.27□□□□□ -2.05
SGD1YLR336C RRI2Q12348 645 aa2.27□□□□□ -2.05
SGD1YLR336C YBR085C-AO43137 85 aa2.26□□□□□ -2.05
SGD1YLR336C CDC24P11433 854 aaPredicted RBP2.26□□□□□ -2.05
SGD1YLR336C YCK1P23291 538 aa2.26□□□□□ -2.05
SGD1YLR336C COQ3P27680 312 aa2.26□□□□□ -2.05
SGD1YLR336C MSS51P32335 436 aa2.26□□□□□ -2.05
SGD1YLR336C SOF1P33750 489 aaKnown RBP2.26□□□□□ -2.05
SGD1YLR336C OCT1P35999 772 aa2.26□□□□□ -2.05
SGD1YLR336C PXL1P36166 706 aa2.26□□□□□ -2.05
SGD1YLR336C MNN2P38069 597 aa2.26□□□□□ -2.05
SGD1YLR336C MRX1P40050 688 aa2.26□□□□□ -2.05
SGD1YLR336C SNO3P43544 222 aa2.26□□□□□ -2.05
SGD1YLR336C DUO1P53168 247 aaKnown RBP2.26□□□□□ -2.05
SGD1YLR336C EAF7P53911 425 aaKnown RBP2.26□□□□□ -2.05
SGD1YLR336C NGL3Q03210 505 aa2.26□□□□□ -2.05
SGD1YLR336C TMA64Q04600 565 aaKnown RBP2.26□□□□□ -2.05
SGD1YLR336C PDR8Q06149 701 aa2.26□□□□□ -2.05
SGD1YLR336C PIG1Q06216 648 aa2.26□□□□□ -2.05
SGD1YLR336C SKG3Q06315 1026 aa2.26□□□□□ -2.05
SGD1YLR336C FRE3Q08905 711 aa2.26□□□□□ -2.05
SGD1YLR336C ATG9Q12142 997 aa2.26□□□□□ -2.05
SGD1YLR336C YOR111WQ99210 232 aa2.26□□□□□ -2.05
SGD1YLR336C YAP1P19880 650 aaKnown RBP2.26□□□□□ -2.05
SGD1YLR336C TKL1P23254 680 aaKnown RBP2.26□□□□□ -2.05
SGD1YLR336C VPS72Q03388 795 aa2.26□□□□□ -2.05
SGD1YLR336C MCH4Q08268 501 aa2.26□□□□□ -2.05
SGD1YLR336C MRP2P10663 115 aaPredicted RBP2.26□□□□□ -2.05
SGD1YLR336C CDC15P27636 974 aa2.26□□□□□ -2.05
SGD1YLR336C MAL33P38157 468 aa2.26□□□□□ -2.05
SGD1YLR336C TPA1P40032 644 aaKnown RBP2.26□□□□□ -2.05
SGD1YLR336C YIL024CP40543 189 aa2.26□□□□□ -2.05
SGD1YLR336C BNA3P47039 444 aaKnown RBP2.26□□□□□ -2.05
SGD1YLR336C COP1P53622 1201 aaKnown RBP2.26□□□□□ -2.05
SGD1YLR336C INA17Q02888 182 aa2.26□□□□□ -2.05
SGD1YLR336C PFA5Q03289 374 aa2.26□□□□□ -2.05
SGD1YLR336C CIR2Q08822 631 aa2.26□□□□□ -2.05
SGD1YLR336C SEM1O94742 89 aa2.25□□□□□ -2.05
SGD1YLR336C MET8P15807 274 aa2.25□□□□□ -2.05
SGD1YLR336C CNA1P23287 553 aa2.25□□□□□ -2.05
SGD1YLR336C STE50P25344 346 aa2.25□□□□□ -2.05
SGD1YLR336C IMP2'P32351 346 aa2.25□□□□□ -2.05
SGD1YLR336C ECM32P32644 1121 aaKnown RBP2.25□□□□□ -2.05
SGD1YLR336C FLO5P38894 1075 aa2.25□□□□□ -2.05
SGD1YLR336C RTS1P38903 757 aa2.25□□□□□ -2.05
SGD1YLR336C NAB3P38996 802 aaKnown RBP RIP-Chip data2.25□□□□□ -2.05not detected
SGD1YLR336C ULP2P40537 1034 aaPredicted RBP2.25□□□□□ -2.05
SGD1YLR336C RPN11P43588 306 aaKnown RBP2.25□□□□□ -2.05
SGD1YLR336C LCL3P53153 274 aa2.25□□□□□ -2.05
SGD1YLR336C ASI1P54074 624 aa2.25□□□□□ -2.05
SGD1YLR336C COG4Q06096 861 aa2.25□□□□□ -2.05
SGD1YLR336C IMH1Q06704 911 aaKnown RBP2.25□□□□□ -2.05
Retrieved 100 of 5,963 RNA–protein pairs in 30.5 ms