RNA–Protein interactions for RNA: ENST00000636907.1

CLN3-252, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,679 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-252ENST00000636907 ZNF396Q96N95 335 aaPredicted RBP19.52■□□□□ 0.72
CLN3-252ENST00000636907 CFAP45Q9UL16 551 aa19.52■□□□□ 0.72
CLN3-252ENST00000636907 KCNJ14Q9UNX9 436 aa19.52■□□□□ 0.72
CLN3-252ENST00000636907 ZNF541Q9H0D2 1346 aa19.52■□□□□ 0.72
CLN3-252ENST00000636907 PALM3A6NDB9 673 aaPredicted RBP19.52■□□□□ 0.71
CLN3-252ENST00000636907 MYO1BO43795 1136 aa19.52■□□□□ 0.71
CLN3-252ENST00000636907 TTLL1O95922 423 aa19.52■□□□□ 0.71
CLN3-252ENST00000636907 MMP1P03956 469 aa19.52■□□□□ 0.71
CLN3-252ENST00000636907 GNAQP50148 359 aa19.52■□□□□ 0.71
CLN3-252ENST00000636907 SHROOM1Q2M3G4 852 aaPredicted RBP19.52■□□□□ 0.71
CLN3-252ENST00000636907 LRRC47Q8N1G4 583 aaKnown RBP19.52■□□□□ 0.71
CLN3-252ENST00000636907 SHISA4Q96DD7 197 aa19.52■□□□□ 0.71
CLN3-252ENST00000636907 USP28Q96RU2 1077 aa19.52■□□□□ 0.71
CLN3-252ENST00000636907 FTOQ9C0B1 505 aaKnown RBP eCLIP19.52■□□□□ 0.71
CLN3-252ENST00000636907 ATL3Q6DD88 541 aa19.51■□□□□ 0.71
CLN3-252ENST00000636907 CAVIN1Q6NZI2 390 aaKnown RBP19.51■□□□□ 0.71
CLN3-252ENST00000636907 DPF2Q92785 391 aa19.51■□□□□ 0.71
CLN3-252ENST00000636907 SYT17Q9BSW7 474 aa19.51■□□□□ 0.71
CLN3-252ENST00000636907 RBM27Q9P2N5 1060 aaKnown RBP19.51■□□□□ 0.71
CLN3-252ENST00000636907 CLIP2Q9UDT6 1046 aa19.51■□□□□ 0.71
CLN3-252ENST00000636907 EGFRP00533 1210 aa19.5■□□□□ 0.71
CLN3-252ENST00000636907 PARP1P09874 1014 aaKnown RBP19.5■□□□□ 0.71
CLN3-252ENST00000636907 GOLGA8HP0CJ92 632 aa19.5■□□□□ 0.71
CLN3-252ENST00000636907 CEBPZQ03701 1054 aaKnown RBP19.5■□□□□ 0.71
CLN3-252ENST00000636907 SLC35G1Q2M3R5 365 aa19.5■□□□□ 0.71
CLN3-252ENST00000636907 TPRNQ4KMQ1 711 aa19.5■□□□□ 0.71
CLN3-252ENST00000636907 RBM26Q5T8P6 1007 aaKnown RBP19.5■□□□□ 0.71
CLN3-252ENST00000636907 MYSM1Q5VVJ2 828 aa19.5■□□□□ 0.71
CLN3-252ENST00000636907 FAM83AQ86UY5 434 aa19.5■□□□□ 0.71
CLN3-252ENST00000636907 MICALL2Q8IY33 904 aa19.5■□□□□ 0.71
CLN3-252ENST00000636907 VPS54Q9P1Q0 977 aa19.5■□□□□ 0.71
CLN3-252ENST00000636907 USP17L5A8MUK1 530 aa19.49■□□□□ 0.71
CLN3-252ENST00000636907 LMNB1P20700 586 aa19.49■□□□□ 0.71
CLN3-252ENST00000636907 U2AF2P26368 475 aaKnown RBP eCLIP19.49■□□□□ 0.71
CLN3-252ENST00000636907 GNL2Q13823 731 aaKnown RBP19.49■□□□□ 0.71
CLN3-252ENST00000636907 USP17L2Q6R6M4 530 aa19.49■□□□□ 0.71
CLN3-252ENST00000636907 PIBF1Q8WXW3 757 aa19.49■□□□□ 0.71
CLN3-252ENST00000636907 LZTS2Q9BRK4 669 aa19.49■□□□□ 0.71
CLN3-252ENST00000636907 TMEM39BQ9GZU3 492 aa19.49■□□□□ 0.71
CLN3-252ENST00000636907 HERC5Q9UII4 1024 aaKnown RBP19.49■□□□□ 0.71
CLN3-252ENST00000636907 CNOT7Q9UIV1 285 aaKnown RBP19.49■□□□□ 0.71
CLN3-252ENST00000636907 GDF11O95390 407 aa19.49■□□□□ 0.71
CLN3-252ENST00000636907 XBP1P17861 261 aa19.49■□□□□ 0.71
CLN3-252ENST00000636907 SAFBQ15424 915 aaKnown RBP eCLIP19.49■□□□□ 0.71
CLN3-252ENST00000636907 PFKFB3Q16875 520 aaPredicted RBP19.49■□□□□ 0.71
CLN3-252ENST00000636907 CDAN1Q8IWY9 1227 aa19.49■□□□□ 0.71
CLN3-252ENST00000636907 DIS3L2Q8IYB7 885 aaKnown RBP19.49■□□□□ 0.71
CLN3-252ENST00000636907 DICER1Q9UPY3 1922 aaKnown RBP19.48■□□□□ 0.71
CLN3-252ENST00000636907 BTBD18B2RXH4 712 aa19.48■□□□□ 0.71
CLN3-252ENST00000636907 KLRF2D3W0D1 207 aa19.48■□□□□ 0.71
CLN3-252ENST00000636907 CYTH3O43739 400 aa19.48■□□□□ 0.71
CLN3-252ENST00000636907 PDHBP11177 359 aa19.48■□□□□ 0.71
CLN3-252ENST00000636907 SCG2P13521 617 aa19.48■□□□□ 0.71
CLN3-252ENST00000636907 ATP2B2Q01814 1243 aa19.48■□□□□ 0.71
CLN3-252ENST00000636907 RRP1BQ14684 758 aaKnown RBP19.48■□□□□ 0.71
CLN3-252ENST00000636907 PPP4R3BQ5MIZ7 849 aa19.48■□□□□ 0.71
CLN3-252ENST00000636907 SAMD7Q7Z3H4 446 aa19.48■□□□□ 0.71
CLN3-252ENST00000636907 XPO5Q9HAV4 1204 aaKnown RBP eCLIP19.48■□□□□ 0.71
CLN3-252ENST00000636907 TMEM63CQ9P1W3 806 aa19.48■□□□□ 0.71
CLN3-252ENST00000636907 RCOR1Q9UKL0 485 aa19.48■□□□□ 0.71
CLN3-252ENST00000636907 SNHG28P0DPA3 235 aa19.47■□□□□ 0.71
CLN3-252ENST00000636907 VEGFAP15692 232 aaPredicted RBP19.47■□□□□ 0.71
CLN3-252ENST00000636907 ABCB5Q2M3G0 1257 aa19.47■□□□□ 0.71
CLN3-252ENST00000636907 TMEM179Q6ZVK1 233 aa19.47■□□□□ 0.71
CLN3-252ENST00000636907 PHF20Q9BVI0 1012 aa19.47■□□□□ 0.71
CLN3-252ENST00000636907 CPVLQ9H3G5 476 aa19.47■□□□□ 0.71
CLN3-252ENST00000636907 KANSL2Q9H9L4 492 aa19.47■□□□□ 0.71
CLN3-252ENST00000636907 PGAP2Q9UHJ9 254 aa19.47■□□□□ 0.71
CLN3-252ENST00000636907 MYH4Q9Y623 1939 aa19.47■□□□□ 0.71
CLN3-252ENST00000636907 BAZ2BQ9UIF8 2168 aaKnown RBP19.46■□□□□ 0.71
CLN3-252ENST00000636907 JAG1P78504 1218 aa19.46■□□□□ 0.71
CLN3-252ENST00000636907 SEPT2Q15019 361 aa19.46■□□□□ 0.71
CLN3-252ENST00000636907 TBC1D10BQ4KMP7 808 aaPredicted RBP19.46■□□□□ 0.71
CLN3-252ENST00000636907 PGBD1Q96JS3 809 aa19.46■□□□□ 0.71
CLN3-252ENST00000636907 SPZ1Q9BXG8 430 aa19.46■□□□□ 0.71
CLN3-252ENST00000636907 FOXP1Q9H334 677 aaPredicted RBP19.46■□□□□ 0.71
CLN3-252ENST00000636907 RTEL1Q9NZ71 1219 aa19.46■□□□□ 0.71
CLN3-252ENST00000636907 CLIC4Q9Y696 253 aa19.46■□□□□ 0.71
CLN3-252ENST00000636907 SBF1O95248 1867 aa19.46■□□□□ 0.71
CLN3-252ENST00000636907 EEF2P13639 858 aaKnown RBP19.46■□□□□ 0.71
CLN3-252ENST00000636907 NOSTRINQ8IVI9 506 aa19.46■□□□□ 0.71
CLN3-252ENST00000636907 OXER1Q8TDS5 423 aa19.46■□□□□ 0.71
CLN3-252ENST00000636907 NYAP2Q9P242 653 aa19.46■□□□□ 0.71
CLN3-252ENST00000636907 SCAF8Q9UPN6 1271 aaKnown RBP19.46■□□□□ 0.71
CLN3-252ENST00000636907 FRMPD2Q68DX3 1309 aaPredicted RBP19.45■□□□□ 0.7
CLN3-252ENST00000636907 TNNI2P48788 182 aa19.45■□□□□ 0.7
CLN3-252ENST00000636907 ICA1Q05084 483 aa19.45■□□□□ 0.7
CLN3-252ENST00000636907 NR5A1Q13285 461 aa19.45■□□□□ 0.7
CLN3-252ENST00000636907 KIF4BQ2VIQ3 1234 aa19.45■□□□□ 0.7
CLN3-252ENST00000636907 ASPRV1Q53RT3 343 aa19.45■□□□□ 0.7
CLN3-252ENST00000636907 SIAH1Q8IUQ4 282 aa19.45■□□□□ 0.7
CLN3-252ENST00000636907 MKL1Q969V6 931 aa19.45■□□□□ 0.7
CLN3-252ENST00000636907 POLR3EQ9NVU0 708 aa19.45■□□□□ 0.7
CLN3-252ENST00000636907 TBC1D12O60347 775 aa19.44■□□□□ 0.7
CLN3-252ENST00000636907 GH2P01242 217 aa19.44■□□□□ 0.7
CLN3-252ENST00000636907 YBX3P16989 372 aaKnown RBP eCLIP19.44■□□□□ 0.7
CLN3-252ENST00000636907 SMARCA1P28370 1054 aa19.44■□□□□ 0.7
CLN3-252ENST00000636907 KRT2P35908 639 aa19.44■□□□□ 0.7
CLN3-252ENST00000636907 NASPP49321 788 aaPredicted RBP19.44■□□□□ 0.7
CLN3-252ENST00000636907 RASA3Q14644 834 aa19.44■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms