RNA–Protein interactions for RNA: ENST00000623219.3

LINC00643-205, long intergenic non-protein coding RNA 643, humanhuman

TSL 1 (best)

Gene LINC00643, Length 962 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-205ENST00000623219 SOCS4Q8WXH5 440 aa17.7■□□□□ 0.42
LINC00643-205ENST00000623219 KANSL2Q9H9L4 492 aa17.7■□□□□ 0.42
LINC00643-205ENST00000623219 BIN2Q9UBW5 565 aaPredicted RBP17.7■□□□□ 0.42
LINC00643-205ENST00000623219 PLIN4Q96Q06 1357 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 SPDYE16A6NNV3 312 aaPredicted RBP17.69■□□□□ 0.42
LINC00643-205ENST00000623219 PEX10O60683 326 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 SLC34A2O95436 690 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 IGHDP01880 384 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 INHAP05111 366 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 CCL5P13501 91 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 ELNP15502 786 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 RASA1P20936 1047 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 NUCB1Q02818 461 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 POTEEQ6S8J3 1075 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 CHD1LQ86WJ1 897 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 IFNL3Q8IZI9 196 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 TANGO6Q9C0B7 1094 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 NAPBQ9H115 298 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 VCPKMTQ9H867 229 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 ZNF287Q9HBT7 754 aa17.69■□□□□ 0.42
LINC00643-205ENST00000623219 WDR46O15213 610 aaKnown RBP17.68■□□□□ 0.42
LINC00643-205ENST00000623219 CNMDO75829 334 aa17.68■□□□□ 0.42
LINC00643-205ENST00000623219 CCNA1P78396 465 aa17.68■□□□□ 0.42
LINC00643-205ENST00000623219 B4GALNT3Q6L9W6 998 aa17.68■□□□□ 0.42
LINC00643-205ENST00000623219 SIAH1Q8IUQ4 282 aa17.68■□□□□ 0.42
LINC00643-205ENST00000623219 CCAR1Q8IX12 1150 aaKnown RBP17.68■□□□□ 0.42
LINC00643-205ENST00000623219 NKX2-3Q8TAU0 364 aa17.68■□□□□ 0.42
LINC00643-205ENST00000623219 MKNK2Q9HBH9 465 aa17.68■□□□□ 0.42
LINC00643-205ENST00000623219 GJD2Q9UKL4 321 aa17.68■□□□□ 0.42
LINC00643-205ENST00000623219 HMGCRP04035 888 aa17.67■□□□□ 0.42
LINC00643-205ENST00000623219 EEF2P13639 858 aaKnown RBP17.67■□□□□ 0.42
LINC00643-205ENST00000623219 Q3C1V9 767 aa17.67■□□□□ 0.42
LINC00643-205ENST00000623219 KIAA1755Q5JYT7 1200 aa17.67■□□□□ 0.42
LINC00643-205ENST00000623219 GPR142Q7Z601 462 aa17.67■□□□□ 0.42
LINC00643-205ENST00000623219 SHISA4Q96DD7 197 aa17.67■□□□□ 0.42
LINC00643-205ENST00000623219 NUDT12Q9BQG2 462 aa17.67■□□□□ 0.42
LINC00643-205ENST00000623219 RNF208Q9H0X6 261 aa17.67■□□□□ 0.42
LINC00643-205ENST00000623219 PORCNQ9H237 461 aa17.67■□□□□ 0.42
LINC00643-205ENST00000623219 OSBPL3Q9H4L5 887 aa17.67■□□□□ 0.42
LINC00643-205ENST00000623219 GOPCQ9HD26 462 aa17.67■□□□□ 0.42
LINC00643-205ENST00000623219 GJB1P08034 283 aa17.66■□□□□ 0.42
LINC00643-205ENST00000623219 GJA8P48165 433 aa17.66■□□□□ 0.42
LINC00643-205ENST00000623219 COG2Q14746 738 aa17.66■□□□□ 0.42
LINC00643-205ENST00000623219 CCDC129Q6ZRS4 1044 aa17.66■□□□□ 0.42
LINC00643-205ENST00000623219 PLEKHH3Q7Z736 793 aa17.66■□□□□ 0.42
LINC00643-205ENST00000623219 SPICE1Q8N0Z3 855 aa17.66■□□□□ 0.42
LINC00643-205ENST00000623219 STK11IPQ8N1F8 1099 aa17.66■□□□□ 0.42
LINC00643-205ENST00000623219 GNL3Q9BVP2 549 aaKnown RBP eCLIP17.66■□□□□ 0.42
LINC00643-205ENST00000623219 HELLSQ9NRZ9 838 aa17.66■□□□□ 0.42
LINC00643-205ENST00000623219 MYH6P13533 1939 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 TRIM6-TRIM34B2RNG4 842 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 FOXP2O15409 715 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 SLC3A2P08195 630 aaKnown RBP17.65■□□□□ 0.42
LINC00643-205ENST00000623219 XRCC5P13010 732 aaKnown RBP17.65■□□□□ 0.42
LINC00643-205ENST00000623219 ATP2B2Q01814 1243 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 PDE4BQ07343 736 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 PPARAQ07869 468 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 PLEKHM2Q8IWE5 1019 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 MB21D1Q8N884 522 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 UNC93B1Q9H1C4 597 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 CWC22Q9HCG8 908 aaKnown RBP17.65■□□□□ 0.42
LINC00643-205ENST00000623219 HOXC10Q9NYD6 342 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 BTBD7Q9P203 1132 aa17.65■□□□□ 0.42
LINC00643-205ENST00000623219 IGKV6D-41A0A0C4DH26 115 aa17.64■□□□□ 0.41
LINC00643-205ENST00000623219 A0A0D9SFI3 127 aa17.64■□□□□ 0.41
LINC00643-205ENST00000623219 FLOT1O75955 427 aa17.64■□□□□ 0.41
LINC00643-205ENST00000623219 MORN1Q5T089 497 aa17.64■□□□□ 0.41
LINC00643-205ENST00000623219 PRPF38BQ5VTL8 546 aaKnown RBP17.64■□□□□ 0.41
LINC00643-205ENST00000623219 TRMT44Q8IYL2 757 aaKnown RBP17.64■□□□□ 0.41
LINC00643-205ENST00000623219 ZNF444Q8N0Y2 327 aaPredicted RBP17.64■□□□□ 0.41
LINC00643-205ENST00000623219 TRIB2Q92519 343 aa17.64■□□□□ 0.41
LINC00643-205ENST00000623219 USP6NLQ92738 828 aa17.64■□□□□ 0.41
LINC00643-205ENST00000623219 APBA2Q99767 749 aa17.64■□□□□ 0.41
LINC00643-205ENST00000623219 PAK6Q9NQU5 681 aaPredicted RBP17.64■□□□□ 0.41
LINC00643-205ENST00000623219 NYAP2Q9P242 653 aa17.64■□□□□ 0.41
LINC00643-205ENST00000623219 ZMYM6O95789 1325 aa17.64■□□□□ 0.41
LINC00643-205ENST00000623219 MCM3APO60318 1980 aa17.63■□□□□ 0.41
LINC00643-205ENST00000623219 PRDM1O75626 825 aa17.63■□□□□ 0.41
LINC00643-205ENST00000623219 CAPN2P17655 700 aa17.63■□□□□ 0.41
LINC00643-205ENST00000623219 DSG3P32926 999 aa17.63■□□□□ 0.41
LINC00643-205ENST00000623219 RGS2P41220 211 aa17.63■□□□□ 0.41
LINC00643-205ENST00000623219 MCMDC2Q4G0Z9 681 aa17.63■□□□□ 0.41
LINC00643-205ENST00000623219 U2AF1L4Q8WU68 220 aaKnown RBP17.63■□□□□ 0.41
LINC00643-205ENST00000623219 RILPL2Q969X0 211 aa17.63■□□□□ 0.41
LINC00643-205ENST00000623219 FAM227BQ96M60 508 aa17.63■□□□□ 0.41
LINC00643-205ENST00000623219 SYNPO2Q9UMS6 1093 aa17.63■□□□□ 0.41
LINC00643-205ENST00000623219 ZKSCAN1P17029 563 aaPredicted RBP17.62■□□□□ 0.41
LINC00643-205ENST00000623219 CYP2B6P20813 491 aa17.62■□□□□ 0.41
LINC00643-205ENST00000623219 WDR78Q5VTH9 848 aa17.62■□□□□ 0.41
LINC00643-205ENST00000623219 ATG4CQ96DT6 458 aa17.62■□□□□ 0.41
LINC00643-205ENST00000623219 SPATC1LQ9H0A9 340 aa17.62■□□□□ 0.41
LINC00643-205ENST00000623219 XRN2Q9H0D6 950 aaKnown RBP eCLIP17.62■□□□□ 0.41
LINC00643-205ENST00000623219 IVNS1ABPQ9Y6Y0 642 aa17.62■□□□□ 0.41
LINC00643-205ENST00000623219 SLC15A5A6NIM6 579 aa17.61■□□□□ 0.41
LINC00643-205ENST00000623219 SGPL1O95470 568 aa17.61■□□□□ 0.41
LINC00643-205ENST00000623219 TSPY3P0CV98 308 aa17.61■□□□□ 0.41
LINC00643-205ENST00000623219 TSPY8P0CW00 308 aa17.61■□□□□ 0.41
LINC00643-205ENST00000623219 MAP2K5Q13163 448 aa17.61■□□□□ 0.41
LINC00643-205ENST00000623219 NMIQ13287 307 aaPredicted RBP17.61■□□□□ 0.41
LINC00643-205ENST00000623219 GRB14Q14449 540 aa17.61■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 53 ms