RNA–Protein interactions for RNA: ENST00000584755.1

UBBP4-202, Transcript of ubiquitin B pseudogene 4, humanhuman

TSL 1 (best) BASIC

Gene UBBP4, Length 1,459 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBBP4-202ENST00000584755 CLEC10AQ8IUN9 316 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 STAG2Q8N3U4 1231 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 TMEM87AQ8NBN3 555 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 TRPM4Q8TD43 1214 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 RBM27Q9P2N5 1060 aaKnown RBP16.22■□□□□ 0.19
UBBP4-202ENST00000584755 MYH6P13533 1939 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 MYH4Q9Y623 1939 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 GRIN3BO60391 1043 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 DDNO94850 711 aaPredicted RBP16.22■□□□□ 0.19
UBBP4-202ENST00000584755 PDHBP11177 359 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 EPS15P42566 896 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 JAG1P78504 1218 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 SHROOM1Q2M3G4 852 aaPredicted RBP16.22■□□□□ 0.19
UBBP4-202ENST00000584755 KRT40Q6A162 431 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 SIAH1Q8IUQ4 282 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 APOBEC3FQ8IUX4 373 aaKnown RBP16.22■□□□□ 0.19
UBBP4-202ENST00000584755 CCDC82Q8N4S0 544 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 GJB4Q9NTQ9 266 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 LMBRD1Q9NUN5 540 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 CLIP2Q9UDT6 1046 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 SYNPO2Q9UMS6 1093 aa16.22■□□□□ 0.19
UBBP4-202ENST00000584755 SRCAPQ6ZRS2 3230 aa16.21■□□□□ 0.19
UBBP4-202ENST00000584755 GDF11O95390 407 aa16.21■□□□□ 0.19
UBBP4-202ENST00000584755 PARP1P09874 1014 aaKnown RBP16.21■□□□□ 0.19
UBBP4-202ENST00000584755 FOSBP53539 338 aa16.21■□□□□ 0.19
UBBP4-202ENST00000584755 HIRAP54198 1017 aaPredicted RBP16.21■□□□□ 0.19
UBBP4-202ENST00000584755 AKAP17AQ02040 695 aaKnown RBP16.21■□□□□ 0.19
UBBP4-202ENST00000584755 GUCY1B3Q02153 619 aa16.21■□□□□ 0.19
UBBP4-202ENST00000584755 SEPT2Q15019 361 aa16.21■□□□□ 0.19
UBBP4-202ENST00000584755 SLC35G1Q2M3R5 365 aa16.21■□□□□ 0.19
UBBP4-202ENST00000584755 OTUD7BQ6GQQ9 843 aa16.21■□□□□ 0.19
UBBP4-202ENST00000584755 L3MBTL3Q96JM7 780 aaPredicted RBP16.21■□□□□ 0.19
UBBP4-202ENST00000584755 SPZ1Q9BXG8 430 aa16.21■□□□□ 0.19
UBBP4-202ENST00000584755 DEFB129Q9H1M3 183 aa16.21■□□□□ 0.19
UBBP4-202ENST00000584755 CABP5Q9NP86 173 aa16.21■□□□□ 0.19
UBBP4-202ENST00000584755 V9GY48 417 aaPredicted RBP16.21■□□□□ 0.19
UBBP4-202ENST00000584755 PITPNM2Q9BZ72 1349 aa16.2■□□□□ 0.18
UBBP4-202ENST00000584755 TCHHQ07283 1943 aa16.2■□□□□ 0.18
UBBP4-202ENST00000584755 MYH15Q9Y2K3 1946 aa16.2■□□□□ 0.18
UBBP4-202ENST00000584755 GH2P01242 217 aa16.2■□□□□ 0.18
UBBP4-202ENST00000584755 EEF2P13639 858 aaKnown RBP16.2■□□□□ 0.18
UBBP4-202ENST00000584755 KIF23Q02241 960 aaPredicted RBP16.2■□□□□ 0.18
UBBP4-202ENST00000584755 ICA1Q05084 483 aa16.2■□□□□ 0.18
UBBP4-202ENST00000584755 DNM1Q05193 864 aaKnown RBP16.2■□□□□ 0.18
UBBP4-202ENST00000584755 GPR162Q16538 588 aa16.2■□□□□ 0.18
UBBP4-202ENST00000584755 ASPRV1Q53RT3 343 aa16.2■□□□□ 0.18
UBBP4-202ENST00000584755 LRRC47Q8N1G4 583 aaKnown RBP16.2■□□□□ 0.18
UBBP4-202ENST00000584755 ADARB2Q9NS39 739 aaKnown RBP16.2■□□□□ 0.18
UBBP4-202ENST00000584755 USP17L5A8MUK1 530 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 PHF20L1A8MW92 1017 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 KLRF2D3W0D1 207 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 CYTH3O43739 400 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 U2AF2P26368 475 aaKnown RBP eCLIP16.19■□□□□ 0.18
UBBP4-202ENST00000584755 TRIM29Q14134 588 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 PFKFB3Q16875 520 aaPredicted RBP16.19■□□□□ 0.18
UBBP4-202ENST00000584755 FOXD4L6Q3SYB3 417 aaPredicted RBP16.19■□□□□ 0.18
UBBP4-202ENST00000584755 ANGEL2Q5VTE6 544 aaKnown RBP16.19■□□□□ 0.18
UBBP4-202ENST00000584755 ATL3Q6DD88 541 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 USP17L2Q6R6M4 530 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 FOXD4L3Q6VB84 417 aaPredicted RBP16.19■□□□□ 0.18
UBBP4-202ENST00000584755 BRAPQ7Z569 592 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 SHISA4Q96DD7 197 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 ZBTB21Q9ULJ3 1066 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 CNPY2Q9Y2B0 182 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 PPP2R3BQ9Y5P8 575 aa16.19■□□□□ 0.18
UBBP4-202ENST00000584755 MMP1P03956 469 aa16.18■□□□□ 0.18
UBBP4-202ENST00000584755 LMOD1P29536 600 aaPredicted RBP16.18■□□□□ 0.18
UBBP4-202ENST00000584755 CAP2P40123 477 aa16.18■□□□□ 0.18
UBBP4-202ENST00000584755 KRT85P78386 507 aa16.18■□□□□ 0.18
UBBP4-202ENST00000584755 ZNF543Q08ER8 600 aa16.18■□□□□ 0.18
UBBP4-202ENST00000584755 FAM173BQ6P4H8 233 aa16.18■□□□□ 0.18
UBBP4-202ENST00000584755 RASGRP2Q7LDG7 609 aa16.18■□□□□ 0.18
UBBP4-202ENST00000584755 GMCL1P1Q8NEA9 526 aa16.18■□□□□ 0.18
UBBP4-202ENST00000584755 RIOX1Q9H6W3 641 aa16.18■□□□□ 0.18
UBBP4-202ENST00000584755 GINM1Q9NU53 330 aa16.18■□□□□ 0.18
UBBP4-202ENST00000584755 KIF28PB7ZC32 967 aa16.17■□□□□ 0.18
UBBP4-202ENST00000584755 PRPF40AO75400 957 aaKnown RBP16.17■□□□□ 0.18
UBBP4-202ENST00000584755 SCG2P13521 617 aa16.17■□□□□ 0.18
UBBP4-202ENST00000584755 SKOR2Q2VWA4 1001 aaPredicted RBP16.17■□□□□ 0.18
UBBP4-202ENST00000584755 GPATCH4Q5T3I0 446 aaKnown RBP16.17■□□□□ 0.18
UBBP4-202ENST00000584755 DPY19L2Q6NUT2 758 aa16.17■□□□□ 0.18
UBBP4-202ENST00000584755 MIGA2Q7L4E1 593 aa16.17■□□□□ 0.18
UBBP4-202ENST00000584755 FAM177A1Q8N128 213 aaPredicted RBP16.17■□□□□ 0.18
UBBP4-202ENST00000584755 DCAF4Q8WV16 495 aa16.17■□□□□ 0.18
UBBP4-202ENST00000584755 GGA3Q9NZ52 723 aa16.17■□□□□ 0.18
UBBP4-202ENST00000584755 SCAF8Q9UPN6 1271 aaKnown RBP16.17■□□□□ 0.18
UBBP4-202ENST00000584755 TRAK2O60296 914 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 GOLGA8HP0CJ92 632 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 XBP1P17861 261 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 CSPP1Q1MSJ5 1256 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 USP48Q86UV5 1035 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 HOOK2Q96ED9 719 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 PHF20Q9BVI0 1012 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 SH3GLB2Q9NR46 395 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 ELP1O95163 1332 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 hCG_1642624A0A1W2PR95 340 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 ATP2B2Q01814 1243 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 NBPF12Q5TAG4 269 aaPredicted RBP16.16■□□□□ 0.18
UBBP4-202ENST00000584755 GMCL1Q96IK5 515 aa16.16■□□□□ 0.18
UBBP4-202ENST00000584755 SCAND2PQ9GZW5 306 aaPredicted RBP16.16■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms