RNA–Protein interactions for RNA: ENST00000581707.1

SREBF1-220, Transcript of sterol regulatory element binding transcription factor 1, humanhuman

TSL 2

Gene SREBF1, Length 695 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SREBF1-220ENST00000581707 LPAR1Q92633 364 aa23.27■■□□□ 1.32
SREBF1-220ENST00000581707 NAPBQ9H115 298 aa23.27■■□□□ 1.32
SREBF1-220ENST00000581707 OSBPL3Q9H4L5 887 aa23.27■■□□□ 1.32
SREBF1-220ENST00000581707 ZNF287Q9HBT7 754 aa23.27■■□□□ 1.32
SREBF1-220ENST00000581707 HELLSQ9NRZ9 838 aa23.27■■□□□ 1.32
SREBF1-220ENST00000581707 UBXN2AP68543 259 aa23.26■■□□□ 1.31
SREBF1-220ENST00000581707 MTFR1Q15390 333 aa23.26■■□□□ 1.31
SREBF1-220ENST00000581707 LBX2Q6XYB7 198 aa23.26■■□□□ 1.31
SREBF1-220ENST00000581707 CCAR1Q8IX12 1150 aaKnown RBP23.26■■□□□ 1.31
SREBF1-220ENST00000581707 PXYLP1Q8TE99 480 aa23.26■■□□□ 1.31
SREBF1-220ENST00000581707 RILPL2Q969X0 211 aa23.26■■□□□ 1.31
SREBF1-220ENST00000581707 GNL3Q9BVP2 549 aaKnown RBP eCLIP23.26■■□□□ 1.31
SREBF1-220ENST00000581707 TANGO6Q9C0B7 1094 aa23.26■■□□□ 1.31
SREBF1-220ENST00000581707 VCPKMTQ9H867 229 aa23.26■■□□□ 1.31
SREBF1-220ENST00000581707 GJD2Q9UKL4 321 aa23.26■■□□□ 1.31
SREBF1-220ENST00000581707 PDE4DIPQ5VU43 2346 aa23.26■■□□□ 1.31
SREBF1-220ENST00000581707 ELNP15502 786 aa23.25■■□□□ 1.31
SREBF1-220ENST00000581707 MAPK4P31152 587 aa23.25■■□□□ 1.31
SREBF1-220ENST00000581707 COG2Q14746 738 aa23.25■■□□□ 1.31
SREBF1-220ENST00000581707 ZNF444Q8N0Y2 327 aaPredicted RBP23.25■■□□□ 1.31
SREBF1-220ENST00000581707 SPICE1Q8N0Z3 855 aa23.25■■□□□ 1.31
SREBF1-220ENST00000581707 HOXC10Q9NYD6 342 aa23.25■■□□□ 1.31
SREBF1-220ENST00000581707 SPDYE16A6NNV3 312 aaPredicted RBP23.24■■□□□ 1.31
SREBF1-220ENST00000581707 CNMDO75829 334 aa23.24■■□□□ 1.31
SREBF1-220ENST00000581707 SLC3A2P08195 630 aaKnown RBP23.24■■□□□ 1.31
SREBF1-220ENST00000581707 MCMDC2Q4G0Z9 681 aa23.24■■□□□ 1.31
SREBF1-220ENST00000581707 FAM227BQ96M60 508 aa23.24■■□□□ 1.31
SREBF1-220ENST00000581707 PORCNQ9H237 461 aa23.24■■□□□ 1.31
SREBF1-220ENST00000581707 GREB1LQ9C091 1923 aaPredicted RBP23.23■■□□□ 1.31
SREBF1-220ENST00000581707 FOXP2O15409 715 aa23.23■■□□□ 1.31
SREBF1-220ENST00000581707 PRDM1O75626 825 aa23.23■■□□□ 1.31
SREBF1-220ENST00000581707 CCL5P13501 91 aa23.23■■□□□ 1.31
SREBF1-220ENST00000581707 CCNA1P78396 465 aa23.23■■□□□ 1.31
SREBF1-220ENST00000581707 PDE4BQ07343 736 aa23.23■■□□□ 1.31
SREBF1-220ENST00000581707 PPARAQ07869 468 aa23.23■■□□□ 1.31
SREBF1-220ENST00000581707 PLXNB2O15031 1838 aa23.22■■□□□ 1.31
SREBF1-220ENST00000581707 A0A0D9SFI3 127 aa23.22■■□□□ 1.31
SREBF1-220ENST00000581707 VPS53Q5VIR6 699 aa23.22■■□□□ 1.31
SREBF1-220ENST00000581707 NUDT12Q9BQG2 462 aa23.22■■□□□ 1.31
SREBF1-220ENST00000581707 GOPCQ9HD26 462 aa23.22■■□□□ 1.31
SREBF1-220ENST00000581707 BTBD7Q9P203 1132 aa23.22■■□□□ 1.31
SREBF1-220ENST00000581707 WDR46O15213 610 aaKnown RBP23.21■■□□□ 1.31
SREBF1-220ENST00000581707 FLOT1O75955 427 aa23.21■■□□□ 1.31
SREBF1-220ENST00000581707 INHAP05111 366 aa23.21■■□□□ 1.31
SREBF1-220ENST00000581707 NMIQ13287 307 aaPredicted RBP23.21■■□□□ 1.31
SREBF1-220ENST00000581707 GPR142Q7Z601 462 aa23.21■■□□□ 1.31
SREBF1-220ENST00000581707 PLEKHH3Q7Z736 793 aa23.21■■□□□ 1.31
SREBF1-220ENST00000581707 RNF208Q9H0X6 261 aa23.21■■□□□ 1.31
SREBF1-220ENST00000581707 CWC22Q9HCG8 908 aaKnown RBP23.21■■□□□ 1.31
SREBF1-220ENST00000581707 NYAP2Q9P242 653 aa23.21■■□□□ 1.31
SREBF1-220ENST00000581707 RLFQ13129 1914 aa23.21■■□□□ 1.31
SREBF1-220ENST00000581707 RAD21O60216 631 aa23.2■■□□□ 1.3
SREBF1-220ENST00000581707 ALX1Q15699 326 aa23.2■■□□□ 1.3
SREBF1-220ENST00000581707 SOCS4Q8WXH5 440 aa23.2■■□□□ 1.3
SREBF1-220ENST00000581707 IGKV6D-41A0A0C4DH26 115 aa23.19■■□□□ 1.3
SREBF1-220ENST00000581707 GJB1P08034 283 aa23.19■■□□□ 1.3
SREBF1-220ENST00000581707 SDSP20132 328 aa23.19■■□□□ 1.3
SREBF1-220ENST00000581707 CYP2B6P20813 491 aa23.19■■□□□ 1.3
SREBF1-220ENST00000581707 DSG3P32926 999 aa23.19■■□□□ 1.3
SREBF1-220ENST00000581707 UNC93B1Q9H1C4 597 aa23.19■■□□□ 1.3
SREBF1-220ENST00000581707 CLIP2Q9UDT6 1046 aa23.19■■□□□ 1.3
SREBF1-220ENST00000581707 MKI67P46013 3256 aaKnown RBP23.18■■□□□ 1.3
SREBF1-220ENST00000581707 TSPY3P0CV98 308 aa23.18■■□□□ 1.3
SREBF1-220ENST00000581707 TSPY8P0CW00 308 aa23.18■■□□□ 1.3
SREBF1-220ENST00000581707 XRCC5P13010 732 aaKnown RBP23.18■■□□□ 1.3
SREBF1-220ENST00000581707 CTDSPL2Q05D32 466 aa23.18■■□□□ 1.3
SREBF1-220ENST00000581707 WDR78Q5VTH9 848 aa23.18■■□□□ 1.3
SREBF1-220ENST00000581707 ZNF589Q86UQ0 364 aaPredicted RBP23.18■■□□□ 1.3
SREBF1-220ENST00000581707 MB21D1Q8N884 522 aa23.18■■□□□ 1.3
SREBF1-220ENST00000581707 NKX2-3Q8TAU0 364 aa23.18■■□□□ 1.3
SREBF1-220ENST00000581707 CEP95Q96GE4 821 aa23.18■■□□□ 1.3
SREBF1-220ENST00000581707 MTMR4Q9NYA4 1195 aa23.18■■□□□ 1.3
SREBF1-220ENST00000581707 MYH4Q9Y623 1939 aa23.18■■□□□ 1.3
SREBF1-220ENST00000581707 HMGCRP04035 888 aa23.17■■□□□ 1.3
SREBF1-220ENST00000581707 HSPD1P10809 573 aaKnown RBP23.17■■□□□ 1.3
SREBF1-220ENST00000581707 TFAP4Q01664 338 aa23.17■■□□□ 1.3
SREBF1-220ENST00000581707 FAM47AQ5JRC9 791 aa23.17■■□□□ 1.3
SREBF1-220ENST00000581707 MORN1Q5T089 497 aa23.17■■□□□ 1.3
SREBF1-220ENST00000581707 SAMD1Q6SPF0 538 aaPredicted RBP23.17■■□□□ 1.3
SREBF1-220ENST00000581707 NEDD1Q8NHV4 660 aa23.17■■□□□ 1.3
SREBF1-220ENST00000581707 USP6NLQ92738 828 aa23.17■■□□□ 1.3
SREBF1-220ENST00000581707 ATG4CQ96DT6 458 aa23.17■■□□□ 1.3
SREBF1-220ENST00000581707 ANAPC4Q9UJX5 808 aa23.17■■□□□ 1.3
SREBF1-220ENST00000581707 CCDC171Q6TFL3 1326 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 F5H6K3 240 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 FGAP02671 866 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 PDE4AP27815 886 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 RGS2P41220 211 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 GJA8P48165 433 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 MFAP1P55081 439 aaKnown RBP23.16■■□□□ 1.3
SREBF1-220ENST00000581707 KLRC3Q07444 240 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 FAM83BQ5T0W9 1011 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 MKL1Q969V6 931 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 SPATC1LQ9H0A9 340 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 DDX52Q9Y2R4 599 aaKnown RBP eCLIP23.16■■□□□ 1.3
SREBF1-220ENST00000581707 PARP14Q460N5 1801 aa23.16■■□□□ 1.3
SREBF1-220ENST00000581707 PLIN4Q96Q06 1357 aa23.15■■□□□ 1.3
SREBF1-220ENST00000581707 SLC15A5A6NIM6 579 aa23.15■■□□□ 1.3
SREBF1-220ENST00000581707 TTLL1O95922 423 aa23.15■■□□□ 1.3
SREBF1-220ENST00000581707 TRMT44Q8IYL2 757 aaKnown RBP23.15■■□□□ 1.3
Retrieved 100 of 20,778 RNA–protein pairs in 47.7 ms