RNA–Protein interactions for RNA: ENST00000567804.1

CLN3-228, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 557 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-228ENST00000567804 FLRT1Q9NZU1 646 aa18.04■□□□□ 0.48
CLN3-228ENST00000567804 SWAP70Q9UH65 585 aa18.04■□□□□ 0.48
CLN3-228ENST00000567804 SOX1O00570 391 aaPredicted RBP18.03■□□□□ 0.48
CLN3-228ENST00000567804 MBD4O95243 580 aa18.03■□□□□ 0.48
CLN3-228ENST00000567804 HOXC6P09630 235 aa18.03■□□□□ 0.48
CLN3-228ENST00000567804 ATP5JP18859 108 aa18.03■□□□□ 0.48
CLN3-228ENST00000567804 BMP8BP34820 402 aa18.03■□□□□ 0.48
CLN3-228ENST00000567804 SLFNL1Q499Z3 407 aa18.03■□□□□ 0.48
CLN3-228ENST00000567804 TMEM179Q6ZVK1 233 aa18.03■□□□□ 0.48
CLN3-228ENST00000567804 CHMP4BQ9H444 224 aaKnown RBP18.03■□□□□ 0.48
CLN3-228ENST00000567804 ATP8A2Q9NTI2 1148 aa18.03■□□□□ 0.48
CLN3-228ENST00000567804 IVNS1ABPQ9Y6Y0 642 aa18.03■□□□□ 0.48
CLN3-228ENST00000567804 GREB1LQ9C091 1923 aaPredicted RBP18.03■□□□□ 0.48
CLN3-228ENST00000567804 PRKAB2O43741 272 aa18.02■□□□□ 0.48
CLN3-228ENST00000567804 SYN1P17600 705 aa18.02■□□□□ 0.48
CLN3-228ENST00000567804 COG2Q14746 738 aa18.02■□□□□ 0.48
CLN3-228ENST00000567804 MFSD14CQ5VZR4 134 aa18.02■□□□□ 0.48
CLN3-228ENST00000567804 DYNLL2Q96FJ2 89 aa18.02■□□□□ 0.48
CLN3-228ENST00000567804 HAUS7Q99871 368 aa18.02■□□□□ 0.48
CLN3-228ENST00000567804 TANGO6Q9C0B7 1094 aa18.02■□□□□ 0.48
CLN3-228ENST00000567804 PLXNA1Q9UIW2 1896 aa18.02■□□□□ 0.48
CLN3-228ENST00000567804 AKR1B1P15121 316 aa18.01■□□□□ 0.47
CLN3-228ENST00000567804 KIAA1755Q5JYT7 1200 aa18.01■□□□□ 0.47
CLN3-228ENST00000567804 NPLOC4Q8TAT6 608 aa18.01■□□□□ 0.47
CLN3-228ENST00000567804 DDX24Q9GZR7 859 aaKnown RBP eCLIP18.01■□□□□ 0.47
CLN3-228ENST00000567804 HOXC10Q9NYD6 342 aa18.01■□□□□ 0.47
CLN3-228ENST00000567804 CHGBP05060 677 aa18■□□□□ 0.47
CLN3-228ENST00000567804 ATP2B2Q01814 1243 aa18■□□□□ 0.47
CLN3-228ENST00000567804 CLEC10AQ8IUN9 316 aa18■□□□□ 0.47
CLN3-228ENST00000567804 LPAR1Q92633 364 aa18■□□□□ 0.47
CLN3-228ENST00000567804 LRCH3Q96II8 777 aa18■□□□□ 0.47
CLN3-228ENST00000567804 MOV10L1Q9BXT6 1211 aaKnown RBP18■□□□□ 0.47
CLN3-228ENST00000567804 SPATC1LQ9H0A9 340 aa18■□□□□ 0.47
CLN3-228ENST00000567804 ARHGEF10LQ9HCE6 1279 aa18■□□□□ 0.47
CLN3-228ENST00000567804 RCAN3Q9UKA8 241 aa18■□□□□ 0.47
CLN3-228ENST00000567804 CYP2D7A0A087X1C5 515 aa17.99■□□□□ 0.47
CLN3-228ENST00000567804 SMIM22K7EJ46 135 aa17.99■□□□□ 0.47
CLN3-228ENST00000567804 IGHA2P01877 340 aa17.99■□□□□ 0.47
CLN3-228ENST00000567804 MAGEA10P43363 369 aaPredicted RBP17.99■□□□□ 0.47
CLN3-228ENST00000567804 ICA1Q05084 483 aa17.99■□□□□ 0.47
CLN3-228ENST00000567804 UBE3CQ15386 1083 aa17.99■□□□□ 0.47
CLN3-228ENST00000567804 LRRC26Q2I0M4 334 aa17.99■□□□□ 0.47
CLN3-228ENST00000567804 C12orf60Q5U649 245 aa17.99■□□□□ 0.47
CLN3-228ENST00000567804 SIAH1Q8IUQ4 282 aa17.99■□□□□ 0.47
CLN3-228ENST00000567804 SHCBP1Q8NEM2 672 aa17.99■□□□□ 0.47
CLN3-228ENST00000567804 DDX20Q9UHI6 824 aaKnown RBP17.99■□□□□ 0.47
CLN3-228ENST00000567804 TMX2Q9Y320 296 aa17.99■□□□□ 0.47
CLN3-228ENST00000567804 LTBP2Q14767 1821 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 MYH4Q9Y623 1939 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 USP17L12C9JPN9 530 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 USP17L21D6R901 530 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 STRNO43815 780 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 MSCO60682 206 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 ADORA2AP29274 412 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 DSG3P32926 999 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 CYP2C19P33261 490 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 CDK8P49336 464 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 AMOTL1Q8IY63 956 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 MB21D1Q8N884 522 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 CCDC17Q96LX7 622 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 LRRCC1Q9C099 1032 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 SH2D4AQ9H788 454 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 VCPKMTQ9H867 229 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 DNAH12Q6ZR08 3092 aa17.98■□□□□ 0.47
CLN3-228ENST00000567804 FLOT1O75955 427 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 CYBAP13498 195 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 ERCC3P19447 782 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 CNGA1P29973 690 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 ZSCAN25Q6NSZ9 544 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 C16orf86Q6ZW13 317 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 DPP9Q86TI2 863 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 SPICE1Q8N0Z3 855 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 TRPV1Q8NER1 839 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 ATG4CQ96DT6 458 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 SLC4A4Q9Y6R1 1079 aa17.97■□□□□ 0.47
CLN3-228ENST00000567804 WDR46O15213 610 aaKnown RBP17.96■□□□□ 0.47
CLN3-228ENST00000567804 SMARCA5O60264 1052 aaPredicted RBP17.96■□□□□ 0.47
CLN3-228ENST00000567804 C20orf194Q5TEA3 1177 aa17.96■□□□□ 0.47
CLN3-228ENST00000567804 OLFML2BQ68BL8 750 aa17.96■□□□□ 0.47
CLN3-228ENST00000567804 DDRGK1Q96HY6 314 aa17.96■□□□□ 0.47
CLN3-228ENST00000567804 PUS7LQ9H0K6 701 aaKnown RBP17.96■□□□□ 0.47
CLN3-228ENST00000567804 SMCHD1A6NHR9 2005 aa17.96■□□□□ 0.47
CLN3-228ENST00000567804 PLS1Q14651 629 aa17.95■□□□□ 0.46
CLN3-228ENST00000567804 TDHQ8IZJ6 230 aa17.95■□□□□ 0.46
CLN3-228ENST00000567804 UBE2OQ9C0C9 1292 aaKnown RBP17.95■□□□□ 0.46
CLN3-228ENST00000567804 MROH8Q9H579 483 aa17.95■□□□□ 0.46
CLN3-228ENST00000567804 DNM1LO00429 736 aa17.94■□□□□ 0.46
CLN3-228ENST00000567804 COBLO75128 1261 aa17.94■□□□□ 0.46
CLN3-228ENST00000567804 EEF2P13639 858 aaKnown RBP17.94■□□□□ 0.46
CLN3-228ENST00000567804 LRIT3Q3SXY7 679 aa17.94■□□□□ 0.46
CLN3-228ENST00000567804 GPR153Q6NV75 609 aa17.94■□□□□ 0.46
CLN3-228ENST00000567804 CTR9Q6PD62 1173 aa17.94■□□□□ 0.46
CLN3-228ENST00000567804 NCAPG2Q86XI2 1143 aa17.94■□□□□ 0.46
CLN3-228ENST00000567804 ABRAQ8N0Z2 381 aa17.94■□□□□ 0.46
CLN3-228ENST00000567804 SENP6Q9GZR1 1112 aaPredicted RBP17.94■□□□□ 0.46
CLN3-228ENST00000567804 ARPP21Q9UBL0 812 aaPredicted RBP17.94■□□□□ 0.46
CLN3-228ENST00000567804 TMEM132BQ14DG7 1078 aa17.93■□□□□ 0.46
CLN3-228ENST00000567804 KANSL2Q9H9L4 492 aa17.93■□□□□ 0.46
CLN3-228ENST00000567804 ECHDC1Q9NTX5 307 aa17.93■□□□□ 0.46
CLN3-228ENST00000567804 SLC5A4Q9NY91 659 aa17.93■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms