RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 RNF208Q9H0X6 261 aa16.29■□□□□ 0.2
VPS9D1-204ENST00000565023 PORCNQ9H237 461 aa16.29■□□□□ 0.2
VPS9D1-204ENST00000565023 A0A0C4DFX4 3053 aa16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 PATL2C9JE40 543 aaKnown RBP16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 PRDM1O75626 825 aa16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 EEF2P13639 858 aaKnown RBP16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 SBK1Q52WX2 424 aa16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 POTEEQ6S8J3 1075 aa16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 RILPL2Q969X0 211 aa16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 EVI5LQ96CN4 794 aa16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 NAPBQ9H115 298 aa16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 UNC93B1Q9H1C4 597 aa16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 STAP2Q9UGK3 403 aa16.28■□□□□ 0.2
VPS9D1-204ENST00000565023 MYH4Q9Y623 1939 aa16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 SPDYE16A6NNV3 312 aaPredicted RBP16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 CNMDO75829 334 aa16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 NUCB1Q02818 461 aa16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 IRF5Q13568 498 aa16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 HABP4Q5JVS0 413 aaKnown RBP16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 GIMAP6Q6P9H5 292 aa16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 CHD1LQ86WJ1 897 aa16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 SIAH1Q8IUQ4 282 aa16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 GTF3C2Q8WUA4 911 aaPredicted RBP16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 NACAP1Q9BZK3 213 aa16.27■□□□□ 0.2
VPS9D1-204ENST00000565023 RASA1P20936 1047 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 TRIM32Q13049 653 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 GPR142Q7Z601 462 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 NUDT12Q9BQG2 462 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 SH2D4AQ9H788 454 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 VCPKMTQ9H867 229 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 KANSL2Q9H9L4 492 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 BTBD7Q9P203 1132 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 GJD2Q9UKL4 321 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 TMX2Q9Y320 296 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 RABGAP1Q9Y3P9 1069 aa16.26■□□□□ 0.19
VPS9D1-204ENST00000565023 GREB1LQ9C091 1923 aaPredicted RBP16.25■□□□□ 0.19
VPS9D1-204ENST00000565023 COL11A1P12107 1806 aaPredicted RBP16.25■□□□□ 0.19
VPS9D1-204ENST00000565023 FLOT1O75955 427 aa16.25■□□□□ 0.19
VPS9D1-204ENST00000565023 MAPK4P31152 587 aa16.25■□□□□ 0.19
VPS9D1-204ENST00000565023 PLS1Q14651 629 aa16.25■□□□□ 0.19
VPS9D1-204ENST00000565023 PLEKHH3Q7Z736 793 aa16.25■□□□□ 0.19
VPS9D1-204ENST00000565023 ZNF444Q8N0Y2 327 aaPredicted RBP16.25■□□□□ 0.19
VPS9D1-204ENST00000565023 PXYLP1Q8TE99 480 aa16.25■□□□□ 0.19
VPS9D1-204ENST00000565023 FAM227BQ96M60 508 aa16.25■□□□□ 0.19
VPS9D1-204ENST00000565023 RLFQ13129 1914 aa16.25■□□□□ 0.19
VPS9D1-204ENST00000565023 PARP14Q460N5 1801 aa16.24■□□□□ 0.19
VPS9D1-204ENST00000565023 CCNA1P78396 465 aa16.24■□□□□ 0.19
VPS9D1-204ENST00000565023 COG2Q14746 738 aa16.24■□□□□ 0.19
VPS9D1-204ENST00000565023 VPS53Q5VIR6 699 aa16.24■□□□□ 0.19
VPS9D1-204ENST00000565023 SHISA4Q96DD7 197 aa16.24■□□□□ 0.19
VPS9D1-204ENST00000565023 ATG4CQ96DT6 458 aa16.24■□□□□ 0.19
VPS9D1-204ENST00000565023 GNL3Q9BVP2 549 aaKnown RBP eCLIP16.24■□□□□ 0.19
VPS9D1-204ENST00000565023 ROBO3Q96MS0 1386 aa16.24■□□□□ 0.19
VPS9D1-204ENST00000565023 A0A0D9SFI3 127 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 HMGCRP04035 888 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 GJB1P08034 283 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 CTDSPL2Q05D32 466 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 PPARAQ07869 468 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 NMIQ13287 307 aaPredicted RBP16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 FAM47AQ5JRC9 791 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 FAM83BQ5T0W9 1011 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 PLEKHM2Q8IWE5 1019 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 U2AF1L4Q8WU68 220 aaKnown RBP16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 TRIB2Q92519 343 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 LPAR1Q92633 364 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 CHMP4CQ96CF2 233 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 DEFB118Q96PH6 123 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 GOPCQ9HD26 462 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 FBXO28Q9NVF7 368 aa16.23■□□□□ 0.19
VPS9D1-204ENST00000565023 WDR46O15213 610 aaKnown RBP16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 SLC3A2P08195 630 aaKnown RBP16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 DSG3P32926 999 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 PDE4BQ07343 736 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 CCL14Q16627 93 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 NKX2-3Q8TAU0 364 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 SOCS4Q8WXH5 440 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 NUP88Q99567 741 aaPredicted RBP16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 ZNF287Q9HBT7 754 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 INCENPQ9NQS7 918 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 HELLSQ9NRZ9 838 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 HOXC10Q9NYD6 342 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 CLIP2Q9UDT6 1046 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 ISY1Q9ULR0 285 aaKnown RBP16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 IVNS1ABPQ9Y6Y0 642 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 A0A0G2JMZ2 1700 aa16.22■□□□□ 0.19
VPS9D1-204ENST00000565023 FOXP2O15409 715 aa16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 TFRCP02786 760 aaKnown RBP16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 TSPY3P0CV98 308 aa16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 TSPY8P0CW00 308 aa16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 ZKSCAN1P17029 563 aaPredicted RBP16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 RGS2P41220 211 aa16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 GJA8P48165 433 aa16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 LBX2Q6XYB7 198 aa16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 LRRC47Q8N1G4 583 aaKnown RBP16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 CEP95Q96GE4 821 aa16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 MOV10L1Q9BXT6 1211 aaKnown RBP16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 XRN2Q9H0D6 950 aaKnown RBP eCLIP16.21■□□□□ 0.19
VPS9D1-204ENST00000565023 CUL9Q8IWT3 2517 aa16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 SGPL1O95470 568 aa16.2■□□□□ 0.18
VPS9D1-204ENST00000565023 NEFLP07196 543 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms