RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 CNGA4Q8IV77 575 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 CTAGE4Q8IX94 777 aa16.86■□□□□ 0.29
CUX1-214ENST00000550008 ZFP91Q96JP5 570 aaPredicted RBP16.86■□□□□ 0.29
CUX1-214ENST00000550008 XDHP47989 1333 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 GOLGA6L10A6NI86 522 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 DDX39AO00148 427 aaKnown RBP16.85■□□□□ 0.29
CUX1-214ENST00000550008 KIF5AQ12840 1032 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 CCDC122Q5T0U0 273 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 LRRC8AQ8IWT6 810 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 TDRD7Q8NHU6 1098 aaKnown RBP16.85■□□□□ 0.29
CUX1-214ENST00000550008 TEKT1Q969V4 418 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 SLF1Q9BQI6 1058 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 BSDC1Q9NW68 430 aaPredicted RBP16.85■□□□□ 0.29
CUX1-214ENST00000550008 RPAP1Q9BWH6 1393 aaPredicted RBP16.85■□□□□ 0.29
CUX1-214ENST00000550008 USP42Q9H9J4 1324 aaKnown RBP16.85■□□□□ 0.29
CUX1-214ENST00000550008 BICDL2A1A5D9 508 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 PHACTR2O75167 634 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 MMP1P03956 469 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 GTF2F1P35269 517 aaKnown RBP eCLIP16.85■□□□□ 0.292e-8■■■□□ 18.7
CUX1-214ENST00000550008 HERC4Q5GLZ8 1057 aaPredicted RBP16.85■□□□□ 0.29
CUX1-214ENST00000550008 NCAPH2Q6IBW4 605 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 KRT25Q7Z3Z0 450 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 MYRIPQ8NFW9 859 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 HOMER2Q9NSB8 354 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 PRKG1Q13976 671 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 TAX1BP1Q86VP1 789 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 SEPT12Q8IYM1 358 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 PSMB7Q99436 277 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 GBP3Q9H0R5 595 aa16.85■□□□□ 0.29
CUX1-214ENST00000550008 GSG1L2A8MUP6 293 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 PPIP5K2O43314 1243 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 ATP2B4P23634 1241 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 SLC16A2P36021 539 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 RNF26Q9BY78 433 aaPredicted RBP16.84■□□□□ 0.29
CUX1-214ENST00000550008 TSPYL1Q9H0U9 437 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 ARFGAP3Q9NP61 516 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 LIFRP42702 1097 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 CDR1P51861 262 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 SPICE1Q8N0Z3 855 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 MARCH10Q8NA82 808 aaPredicted RBP16.84■□□□□ 0.29
CUX1-214ENST00000550008 TMEM87AQ8NBN3 555 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 OXER1Q8TDS5 423 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 SENP2Q9HC62 589 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 EVCP57679 992 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 SPECC1LQ69YQ0 1117 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 FAM13AO94988 1023 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 CACNB3P54284 484 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 BMS1Q14692 1282 aaKnown RBP16.84■□□□□ 0.29
CUX1-214ENST00000550008 NEK11Q8NG66 645 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 PPIL4Q8WUA2 492 aaKnown RBP eCLIP16.84■□□□□ 0.29
CUX1-214ENST00000550008 CPDO75976 1380 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 COL15A1P39059 1388 aa16.84■□□□□ 0.29
CUX1-214ENST00000550008 MEGF6O75095 1541 aa16.83■□□□□ 0.29
CUX1-214ENST00000550008 CLEC17AQ6ZS10 378 aa16.83■□□□□ 0.29
CUX1-214ENST00000550008 SCLT1Q96NL6 688 aa16.83■□□□□ 0.29
CUX1-214ENST00000550008 SALL3Q9BXA9 1300 aa16.83■□□□□ 0.29
CUX1-214ENST00000550008 H0YHG0 523 aa16.83■□□□□ 0.28
CUX1-214ENST00000550008 RAPGEF1Q13905 1077 aa16.83■□□□□ 0.28
CUX1-214ENST00000550008 CCDC174Q6PII3 467 aa16.83■□□□□ 0.28
CUX1-214ENST00000550008 DHX37Q8IY37 1157 aaKnown RBP16.83■□□□□ 0.28
CUX1-214ENST00000550008 ARHGEF1Q92888 912 aaKnown RBP16.83■□□□□ 0.28
CUX1-214ENST00000550008 FAM207AQ9NSI2 230 aaPredicted RBP16.83■□□□□ 0.28
CUX1-214ENST00000550008 RNASE9P60153 205 aaKnown RBP16.82■□□□□ 0.28
CUX1-214ENST00000550008 RBM6P78332 1123 aaKnown RBP16.82■□□□□ 0.28
CUX1-214ENST00000550008 BICD1Q96G01 975 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 BCL2L12Q9HB09 334 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 CDHR2Q9BYE9 1310 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 USP32Q8NFA0 1604 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 KRT86O43790 486 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 RPS6KA4O75676 772 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 ERLIN2O94905 339 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 MRFAP1L1Q96HT8 127 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 MYO6Q9UM54 1294 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 NEURL4Q96JN8 1562 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 KIF28PB7ZC32 967 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 TCP10L2B9ZVM9 353 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 GUCY1A2P33402 732 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 ITPK1Q13572 414 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 FOXP1Q9H334 677 aaPredicted RBP16.82■□□□□ 0.28
CUX1-214ENST00000550008 PRM3Q9NNZ6 103 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 CETN1Q12798 172 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 COA7Q96BR5 231 aa16.82■□□□□ 0.28
CUX1-214ENST00000550008 ARHGAP6O43182 974 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 CLEC4GQ6UXB4 293 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 KCTD1Q719H9 257 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 C2CD5Q86YS7 1000 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 SH3RF3Q8TEJ3 882 aaPredicted RBP16.81■□□□□ 0.28
CUX1-214ENST00000550008 LY9Q9HBG7 655 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 STK32BQ9NY57 414 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 LEMD3Q9Y2U8 911 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 MYO5BQ9ULV0 1848 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 DDAH1O94760 285 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 KRT222Q8N1A0 295 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 NLRC4Q9NPP4 1024 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 BCCIPQ9P287 314 aaKnown RBP eCLIP16.81■□□□□ 0.28
CUX1-214ENST00000550008 IMPACTQ9P2X3 320 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 ZNF215Q9UL58 517 aaPredicted RBP16.81■□□□□ 0.28
CUX1-214ENST00000550008 CLRN2A0PK11 232 aa16.81■□□□□ 0.28
CUX1-214ENST00000550008 EXOSC10Q01780 885 aaKnown RBP16.81■□□□□ 0.28
CUX1-214ENST00000550008 CTNNBL1Q8WYA6 563 aaPredicted RBP16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms