RNA–Protein interactions for RNA: ENST00000543721.1

LMO3-229, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 3,626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-229ENST00000543721 GUCA1BQ9UMX6 200 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 LMTK3Q96Q04 1460 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 TMEM94Q12767 1356 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 A0A1W2PQC6 194 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 USO1O60763 962 aaKnown RBP5.6□□□□□ -1.51
LMO3-229ENST00000543721 TCP1P17987 556 aaKnown RBP5.6□□□□□ -1.51
LMO3-229ENST00000543721 ACTN3Q08043 901 aaPredicted RBP5.6□□□□□ -1.51
LMO3-229ENST00000543721 NBPF9Q3BBW0 867 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 SND1Q7KZF4 910 aaKnown RBP eCLIP5.6□□□□□ -1.51
LMO3-229ENST00000543721 TRMT44Q8IYL2 757 aaKnown RBP5.6□□□□□ -1.51
LMO3-229ENST00000543721 IP6K1Q92551 441 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 CLIC6Q96NY7 704 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 SLF1Q9BQI6 1058 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 AATFQ9NY61 560 aaKnown RBP eCLIP5.6□□□□□ -1.51
LMO3-229ENST00000543721 LUC7L2Q9Y383 392 aaKnown RBP5.6□□□□□ -1.51
LMO3-229ENST00000543721 GRIN2DO15399 1336 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 ZBTB43O43298 467 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 PAFAH1B1P43034 410 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 VAV2P52735 878 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 COPB1P53618 953 aaKnown RBP5.6□□□□□ -1.51
LMO3-229ENST00000543721 NAP1L1P55209 391 aaKnown RBP5.6□□□□□ -1.51
LMO3-229ENST00000543721 CUL4BQ13620 913 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 SNCBQ16143 134 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 CCDC121Q6ZUS5 278 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 IQCA1Q86XH1 822 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 TRIM58Q8NG06 486 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 ZKSCAN4Q969J2 545 aaPredicted RBP5.6□□□□□ -1.51
LMO3-229ENST00000543721 FERMT2Q96AC1 680 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 MMS19Q96T76 1030 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 LGR6Q9HBX8 967 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 RWDD2AQ9UIY3 292 aa5.6□□□□□ -1.51
LMO3-229ENST00000543721 FBXO2Q9UK22 296 aaPredicted RBP5.6□□□□□ -1.51
LMO3-229ENST00000543721 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP5.6□□□□□ -1.51
LMO3-229ENST00000543721 HMGB1P1B2RPK0 211 aaPredicted RBP5.59□□□□□ -1.51
LMO3-229ENST00000543721 H7C1D1 291 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 ACTN4O43707 911 aaKnown RBP5.59□□□□□ -1.51
LMO3-229ENST00000543721 PPFIA3O75145 1194 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 TACC1O75410 805 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 IGKV5-2P06315 115 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 XBP1P17861 261 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 FXR1P51114 621 aaKnown RBP eCLIP5.59□□□□□ -1.51
LMO3-229ENST00000543721 SLC8A3P57103 927 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 ERVK-24P63145 666 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 TTF1Q15361 905 aaPredicted RBP5.59□□□□□ -1.51
LMO3-229ENST00000543721 HSP90AA4PQ58FG1 418 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 PPP4R3AQ6IN85 833 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 CHST3Q7LGC8 479 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 CD302Q8IX05 232 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 NOC3LQ8WTT2 800 aaKnown RBP5.59□□□□□ -1.51
LMO3-229ENST00000543721 APPBP2Q92624 585 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 NEUROD6Q96NK8 337 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 TSKSQ9UJT2 592 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 CLEC11AQ9Y240 323 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 CCDC9Q9Y3X0 531 aaKnown RBP5.59□□□□□ -1.51
LMO3-229ENST00000543721 RCAN1P53805 252 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 KIF5AQ12840 1032 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 NKX1-1Q15270 411 aaPredicted RBP5.59□□□□□ -1.51
LMO3-229ENST00000543721 CFAP58Q5T655 872 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 IFT20Q8IY31 132 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 MTA3Q9BTC8 594 aa5.59□□□□□ -1.51
LMO3-229ENST00000543721 DDX24Q9GZR7 859 aaKnown RBP eCLIP5.59□□□□□ -1.51
LMO3-229ENST00000543721 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.59□□□□□ -1.52
LMO3-229ENST00000543721 GOLGA6L10A6NI86 522 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 GOLGA8AA7E2F4 631 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 PES1O00541 588 aaKnown RBP5.59□□□□□ -1.52
LMO3-229ENST00000543721 RASSF9O75901 435 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 IFNAR1P17181 557 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 CDK17Q00537 523 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 PAK2Q13177 524 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 PPP2R5BQ15173 497 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 SKIDA1Q1XH10 827 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 RNF187Q5TA31 235 aaPredicted RBP5.59□□□□□ -1.52
LMO3-229ENST00000543721 SH3RF1Q7Z6J0 888 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 STK11IPQ8N1F8 1099 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 N4BP2L2Q92802 583 aaPredicted RBP5.59□□□□□ -1.52
LMO3-229ENST00000543721 LTV1Q96GA3 475 aaPredicted RBP5.59□□□□□ -1.52
LMO3-229ENST00000543721 RSRC1Q96IZ7 334 aaKnown RBP5.59□□□□□ -1.52
LMO3-229ENST00000543721 CCDC114Q96M63 670 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 DNAJC7Q99615 494 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 MYD88Q99836 296 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 TRIM6Q9C030 488 aaPredicted RBP5.59□□□□□ -1.52
LMO3-229ENST00000543721 NBPF3Q9H094 633 aa5.59□□□□□ -1.52
LMO3-229ENST00000543721 DIP2BQ9P265 1576 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 ANKRD18BA2A2Z9 1011 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 SH2B2O14492 632 aaPredicted RBP5.58□□□□□ -1.52
LMO3-229ENST00000543721 KCNQ3O43525 872 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 PPP1R37O75864 691 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 CIAO1O76071 339 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 FMNL1O95466 1100 aaPredicted RBP5.58□□□□□ -1.52
LMO3-229ENST00000543721 FAM107AO95990 144 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 MMP1P03956 469 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 EEF1GP26641 437 aaKnown RBP5.58□□□□□ -1.52
LMO3-229ENST00000543721 LIFRP42702 1097 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 AIMP1Q12904 312 aaKnown RBP5.58□□□□□ -1.52
LMO3-229ENST00000543721 KRT31Q15323 416 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 SPA17Q15506 151 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 PTPN21Q16825 1174 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 PROSER3Q2NL68 480 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 CCDC181Q5TID7 509 aa5.58□□□□□ -1.52
LMO3-229ENST00000543721 KLHL10Q6JEL2 608 aa5.58□□□□□ -1.52
Retrieved 100 of 20,778 RNA–protein pairs in 48.4 ms