RNA–Protein interactions for RNA: ENST00000543721.1

LMO3-229, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 3,626 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-229ENST00000543721 AEBP2Q6ZN18 517 aaPredicted RBP10.4□□□□□ -0.74
LMO3-229ENST00000543721 CHIC1Q5VXU3 224 aa10.34□□□□□ -0.75
LMO3-229ENST00000543721 NISCHQ9Y2I1 1504 aa9.35□□□□□ -0.91
LMO3-229ENST00000543721 PHF23Q9BUL5 403 aaPredicted RBP9.19□□□□□ -0.94
LMO3-229ENST00000543721 SENP3Q9H4L4 574 aaPredicted RBP8.66□□□□□ -1.02
LMO3-229ENST00000543721 PLPPR3Q6T4P5 718 aa8.44□□□□□ -1.06
LMO3-229ENST00000543721 HRCP23327 699 aa8.37□□□□□ -1.07
LMO3-229ENST00000543721 PELP1Q8IZL8 1130 aaKnown RBP8.32□□□□□ -1.08
LMO3-229ENST00000543721 SUPT5HO00267 1087 aaKnown RBP8.11□□□□□ -1.11
LMO3-229ENST00000543721 PCGF6Q9BYE7 350 aa8.1□□□□□ -1.11
LMO3-229ENST00000543721 MYT1Q01538 1121 aa8.09□□□□□ -1.11
LMO3-229ENST00000543721 DCAF1Q9Y4B6 1507 aa8.08□□□□□ -1.12
LMO3-229ENST00000543721 FOXD1Q16676 465 aa8.08□□□□□ -1.12
LMO3-229ENST00000543721 SHROOM4Q9ULL8 1493 aa8.07□□□□□ -1.12
LMO3-229ENST00000543721 ZEB1P37275 1124 aaPredicted RBP8.04□□□□□ -1.12
LMO3-229ENST00000543721 MYO15BQ96JP2 1530 aa8.02□□□□□ -1.13
LMO3-229ENST00000543721 PPP6R1Q9UPN7 881 aa8□□□□□ -1.13
LMO3-229ENST00000543721 PPARGC1BQ86YN6 1023 aaKnown RBP7.99□□□□□ -1.13
LMO3-229ENST00000543721 ADRA2BP18089 450 aa7.97□□□□□ -1.13
LMO3-229ENST00000543721 CCDC180Q9P1Z9 1646 aa7.97□□□□□ -1.13
LMO3-229ENST00000543721 TRIM26Q12899 539 aaPredicted RBP7.97□□□□□ -1.13
LMO3-229ENST00000543721 ZCCHC6Q5VYS8 1495 aaKnown RBP7.97□□□□□ -1.13
LMO3-229ENST00000543721 SCAF1Q9H7N4 1312 aaKnown RBP7.84□□□□□ -1.16
LMO3-229ENST00000543721 LOC105371045A0A1W2PR82 267 aa7.77□□□□□ -1.17
LMO3-229ENST00000543721 CENPBP07199 599 aaPredicted RBP7.75□□□□□ -1.17
LMO3-229ENST00000543721 ACIN1Q9UKV3 1341 aaKnown RBP7.74□□□□□ -1.17
LMO3-229ENST00000543721 SLC24A1O60721 1099 aa7.73□□□□□ -1.17
LMO3-229ENST00000543721 NEUROD1Q13562 356 aa7.63□□□□□ -1.19
LMO3-229ENST00000543721 TTBK1Q5TCY1 1321 aaPredicted RBP7.62□□□□□ -1.19
LMO3-229ENST00000543721 GTF3C3Q9Y5Q9 886 aa7.61□□□□□ -1.19
LMO3-229ENST00000543721 KCNA4P22459 653 aa7.61□□□□□ -1.19
LMO3-229ENST00000543721 DCAF8L2P0C7V8 631 aa7.6□□□□□ -1.19
LMO3-229ENST00000543721 TRIM41Q8WV44 630 aa7.6□□□□□ -1.19
LMO3-229ENST00000543721 DIEXFQ68CQ4 756 aaKnown RBP7.59□□□□□ -1.19
LMO3-229ENST00000543721 PIAS4Q8N2W9 510 aaPredicted RBP7.59□□□□□ -1.19
LMO3-229ENST00000543721 ABCC9O60706 1549 aa7.57□□□□□ -1.2
LMO3-229ENST00000543721 CCER1Q8TC90 406 aaPredicted RBP7.57□□□□□ -1.2
LMO3-229ENST00000543721 CLSPNQ9HAW4 1339 aa7.52□□□□□ -1.21
LMO3-229ENST00000543721 RB1CC1Q8TDY2 1594 aa7.51□□□□□ -1.21
LMO3-229ENST00000543721 RSF1Q96T23 1441 aaPredicted RBP7.49□□□□□ -1.21
LMO3-229ENST00000543721 PPP4R3CPQ6ZMV5 832 aa7.48□□□□□ -1.21
LMO3-229ENST00000543721 ZNF316A6NFI3 1004 aaPredicted RBP7.48□□□□□ -1.21
LMO3-229ENST00000543721 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP7.48□□□□□ -1.21
LMO3-229ENST00000543721 FAM9AQ8IZU1 332 aaPredicted RBP7.46□□□□□ -1.22
LMO3-229ENST00000543721 WRNQ14191 1432 aaPredicted RBP eCLIP7.44□□□□□ -1.22
LMO3-229ENST00000543721 YTHDC1Q96MU7 727 aaKnown RBP7.34□□□□□ -1.23
LMO3-229ENST00000543721 ANP32EQ9BTT0 268 aa7.33□□□□□ -1.24
LMO3-229ENST00000543721 MIER1Q8N108 512 aa7.33□□□□□ -1.24
LMO3-229ENST00000543721 EEA1Q15075 1411 aa7.33□□□□□ -1.24
LMO3-229ENST00000543721 TNIKQ9UKE5 1360 aa7.32□□□□□ -1.24
LMO3-229ENST00000543721 SCRIBQ14160 1630 aa7.31□□□□□ -1.24
LMO3-229ENST00000543721 EHMT2Q96KQ7 1210 aa7.31□□□□□ -1.24
LMO3-229ENST00000543721 CEP162Q5TB80 1403 aa7.3□□□□□ -1.24
LMO3-229ENST00000543721 NPM3O75607 178 aaKnown RBP7.28□□□□□ -1.24
LMO3-229ENST00000543721 MSH5O43196 834 aa7.28□□□□□ -1.24
LMO3-229ENST00000543721 NCBP3Q53F19 620 aaKnown RBP7.28□□□□□ -1.24
LMO3-229ENST00000543721 SUPT16HQ9Y5B9 1047 aaKnown RBP7.27□□□□□ -1.25
LMO3-229ENST00000543721 BCL11AQ9H165 835 aa7.26□□□□□ -1.25
LMO3-229ENST00000543721 EIF4G1Q04637 1599 aaKnown RBP7.25□□□□□ -1.25
LMO3-229ENST00000543721 BAZ1AQ9NRL2 1556 aaPredicted RBP7.25□□□□□ -1.25
LMO3-229ENST00000543721 TSHZ2Q9NRE2 1034 aa7.24□□□□□ -1.25
LMO3-229ENST00000543721 MROH2BQ7Z745 1585 aa7.23□□□□□ -1.25
LMO3-229ENST00000543721 SLC4A1APQ9BWU0 796 aaKnown RBP7.22□□□□□ -1.25
LMO3-229ENST00000543721 GOLGA3Q08378 1498 aa7.22□□□□□ -1.25
LMO3-229ENST00000543721 CNKSR2Q8WXI2 1034 aa7.22□□□□□ -1.25
LMO3-229ENST00000543721 CSRNP3Q8WYN3 585 aa7.21□□□□□ -1.25
LMO3-229ENST00000543721 NACADO15069 1562 aa7.21□□□□□ -1.26
LMO3-229ENST00000543721 CECR2Q9BXF3 1484 aa7.2□□□□□ -1.26
LMO3-229ENST00000543721 WIZO95785 1651 aa7.2□□□□□ -1.26
LMO3-229ENST00000543721 UBTFP17480 764 aaKnown RBP7.2□□□□□ -1.26
LMO3-229ENST00000543721 APLP2Q06481 763 aa7.19□□□□□ -1.26
LMO3-229ENST00000543721 MYT1LQ9UL68 1186 aa7.17□□□□□ -1.26
LMO3-229ENST00000543721 HNRNPUL2Q1KMD3 747 aaKnown RBP7.17□□□□□ -1.26
LMO3-229ENST00000543721 CCDC88BA6NC98 1476 aa7.17□□□□□ -1.26
LMO3-229ENST00000543721 TOP2AP11388 1531 aaKnown RBP7.16□□□□□ -1.26
LMO3-229ENST00000543721 MAPK8IP2Q13387 824 aaPredicted RBP7.16□□□□□ -1.26
LMO3-229ENST00000543721 DNAJC5BQ9UF47 199 aa7.16□□□□□ -1.26
LMO3-229ENST00000543721 CEP164Q9UPV0 1460 aa7.16□□□□□ -1.26
LMO3-229ENST00000543721 NEFLP07196 543 aa7.15□□□□□ -1.27
LMO3-229ENST00000543721 VPS8Q8N3P4 1428 aa7.15□□□□□ -1.27
LMO3-229ENST00000543721 KIF21BO75037 1637 aa7.14□□□□□ -1.27
LMO3-229ENST00000543721 BAZ1BQ9UIG0 1483 aaKnown RBP7.14□□□□□ -1.27
LMO3-229ENST00000543721 SOGA1O94964 1423 aa7.13□□□□□ -1.27
LMO3-229ENST00000543721 ABCC8Q09428 1581 aa7.13□□□□□ -1.27
LMO3-229ENST00000543721 CLIP1P30622 1438 aa7.12□□□□□ -1.27
LMO3-229ENST00000543721 DHX57Q6P158 1386 aaKnown RBP7.11□□□□□ -1.27
LMO3-229ENST00000543721 SMARCA2P51531 1590 aa7.1□□□□□ -1.27
LMO3-229ENST00000543721 ZBTB22O15209 634 aa7.09□□□□□ -1.27
LMO3-229ENST00000543721 DAXXQ9UER7 740 aaPredicted RBP7.09□□□□□ -1.27
LMO3-229ENST00000543721 RBM19Q9Y4C8 960 aaKnown RBP7.08□□□□□ -1.28
LMO3-229ENST00000543721 FKBP8Q14318 412 aa7.07□□□□□ -1.28
LMO3-229ENST00000543721 ERICH6Q7L0X2 663 aa7.07□□□□□ -1.28
LMO3-229ENST00000543721 FANCIQ9NVI1 1328 aa7.06□□□□□ -1.28
LMO3-229ENST00000543721 CUX2O14529 1486 aa7.06□□□□□ -1.28
LMO3-229ENST00000543721 CCER2I3L3R5 266 aa7.05□□□□□ -1.28
LMO3-229ENST00000543721 RUSC2Q8N2Y8 1516 aa7.05□□□□□ -1.28
LMO3-229ENST00000543721 SMARCA4P51532 1647 aa7.05□□□□□ -1.28
LMO3-229ENST00000543721 RNF216Q9NWF9 866 aaPredicted RBP7.05□□□□□ -1.28
LMO3-229ENST00000543721 TIMELESSQ9UNS1 1208 aa7.04□□□□□ -1.28
LMO3-229ENST00000543721 ERICH6BQ5W0A0 696 aa7.03□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 77.6 ms