RNA–Protein interactions for RNA: ENST00000540756.5

TTC3-225, Transcript of tetratricopeptide repeat domain 3, humanhuman

TSL 2 BASIC

Gene TTC3, Length 2,025 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TTC3-225ENST00000540756 USP17L2Q6R6M4 530 aa28.43■■■□□ 2.14
TTC3-225ENST00000540756 SYT17Q9BSW7 474 aa28.43■■■□□ 2.14
TTC3-225ENST00000540756 TMEM39BQ9GZU3 492 aa28.43■■■□□ 2.14
TTC3-225ENST00000540756 VPS54Q9P1Q0 977 aa28.43■■■□□ 2.14
TTC3-225ENST00000540756 CLIP2Q9UDT6 1046 aa28.43■■■□□ 2.14
TTC3-225ENST00000540756 KIF5BP33176 963 aa28.43■■■□□ 2.14
TTC3-225ENST00000540756 AKAP17AQ02040 695 aaKnown RBP28.43■■■□□ 2.14
TTC3-225ENST00000540756 TRIM29Q14134 588 aa28.43■■■□□ 2.14
TTC3-225ENST00000540756 CERKLQ49MI3 558 aaPredicted RBP28.43■■■□□ 2.14
TTC3-225ENST00000540756 FOXP4Q8IVH2 680 aaPredicted RBP28.43■■■□□ 2.14
TTC3-225ENST00000540756 SPATA32Q96LK8 384 aa28.43■■■□□ 2.14
TTC3-225ENST00000540756 JAG1P78504 1218 aa28.42■■■□□ 2.14
TTC3-225ENST00000540756 TATDN1Q6P1N9 297 aa28.42■■■□□ 2.14
TTC3-225ENST00000540756 SAMD7Q7Z3H4 446 aa28.42■■■□□ 2.14
TTC3-225ENST00000540756 METTL16Q86W50 562 aaKnown RBP28.42■■■□□ 2.14
TTC3-225ENST00000540756 MAP3K14Q99558 947 aa28.42■■■□□ 2.14
TTC3-225ENST00000540756 TRIM34Q9BYJ4 488 aa28.42■■■□□ 2.14
TTC3-225ENST00000540756 GDF11O95390 407 aa28.42■■■□□ 2.14
TTC3-225ENST00000540756 ZNF280AP59817 542 aaPredicted RBP28.42■■■□□ 2.14
TTC3-225ENST00000540756 MICALL2Q8IY33 904 aa28.42■■■□□ 2.14
TTC3-225ENST00000540756 FAM151AQ8WW52 585 aa28.42■■■□□ 2.14
TTC3-225ENST00000540756 PALM3A6NDB9 673 aaPredicted RBP28.41■■■□□ 2.14
TTC3-225ENST00000540756 USP17L5A8MUK1 530 aa28.41■■■□□ 2.14
TTC3-225ENST00000540756 CYTH3O43739 400 aa28.41■■■□□ 2.14
TTC3-225ENST00000540756 SCAND2PQ9GZW5 306 aaPredicted RBP28.41■■■□□ 2.14
TTC3-225ENST00000540756 TMEM63CQ9P1W3 806 aa28.41■■■□□ 2.14
TTC3-225ENST00000540756 MYH4Q9Y623 1939 aa28.41■■■□□ 2.14
TTC3-225ENST00000540756 ASTN2O75129 1339 aaPredicted RBP28.4■■■□□ 2.14
TTC3-225ENST00000540756 BTBD18B2RXH4 712 aa28.4■■■□□ 2.14
TTC3-225ENST00000540756 MMP1P03956 469 aa28.4■■■□□ 2.14
TTC3-225ENST00000540756 UBE2HP62256 183 aa28.4■■■□□ 2.14
TTC3-225ENST00000540756 TTLL1O95922 423 aa28.4■■■□□ 2.14
TTC3-225ENST00000540756 ATP2B2Q01814 1243 aa28.4■■■□□ 2.14
TTC3-225ENST00000540756 CNOT7Q9UIV1 285 aaKnown RBP28.4■■■□□ 2.14
TTC3-225ENST00000540756 SBF1O95248 1867 aa28.39■■■□□ 2.14
TTC3-225ENST00000540756 COL2A1P02458 1487 aaPredicted RBP28.39■■■□□ 2.14
TTC3-225ENST00000540756 RPS12P25398 132 aaKnown RBP28.39■■■□□ 2.14
TTC3-225ENST00000540756 MYSM1Q5VVJ2 828 aa28.39■■■□□ 2.14
TTC3-225ENST00000540756 RGS22Q8NE09 1264 aa28.39■■■□□ 2.14
TTC3-225ENST00000540756 OXER1Q8TDS5 423 aa28.39■■■□□ 2.14
TTC3-225ENST00000540756 CCDC17Q96LX7 622 aa28.39■■■□□ 2.14
TTC3-225ENST00000540756 TBC1D10BQ4KMP7 808 aaPredicted RBP28.38■■■□□ 2.13
TTC3-225ENST00000540756 CFAP45Q9UL16 551 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 ELP1O95163 1332 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 KLRF2D3W0D1 207 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 MYO1BO43795 1136 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 MBD3O95983 291 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 PDHBP11177 359 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 U2AF2P26368 475 aaKnown RBP eCLIP28.38■■■□□ 2.137e-8■■■□□ 15.2
TTC3-225ENST00000540756 SEPT2Q15019 361 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 CSPP1Q1MSJ5 1256 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 BRAPQ7Z569 592 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 DIS3L2Q8IYB7 885 aaKnown RBP28.38■■■□□ 2.13
TTC3-225ENST00000540756 PGBD1Q96JS3 809 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 CLIC4Q9Y696 253 aa28.38■■■□□ 2.13
TTC3-225ENST00000540756 FRMPD2Q68DX3 1309 aaPredicted RBP28.37■■■□□ 2.13
TTC3-225ENST00000540756 PARP1P09874 1014 aaKnown RBP28.37■■■□□ 2.13
TTC3-225ENST00000540756 NR5A1Q13285 461 aa28.37■■■□□ 2.13
TTC3-225ENST00000540756 YBX3P16989 372 aaKnown RBP eCLIP28.36■■■□□ 2.134e-14■□□□□ 9.1
TTC3-225ENST00000540756 GNL2Q13823 731 aaKnown RBP28.36■■■□□ 2.13
TTC3-225ENST00000540756 SIAH1Q8IUQ4 282 aa28.36■■■□□ 2.13
TTC3-225ENST00000540756 ZNF396Q96N95 335 aaPredicted RBP28.36■■■□□ 2.13
TTC3-225ENST00000540756 XPO5Q9HAV4 1204 aaKnown RBP eCLIP28.36■■■□□ 2.132e-7■□□□□ 8.5
TTC3-225ENST00000540756 DICER1Q9UPY3 1922 aaKnown RBP28.36■■■□□ 2.13
TTC3-225ENST00000540756 LMNB1P20700 586 aa28.36■■■□□ 2.13
TTC3-225ENST00000540756 FKBP1CQ5VVH2 108 aa28.36■■■□□ 2.13
TTC3-225ENST00000540756 MIGA2Q7L4E1 593 aa28.36■■■□□ 2.13
TTC3-225ENST00000540756 DPF2Q92785 391 aa28.36■■■□□ 2.13
TTC3-225ENST00000540756 PGAP2Q9UHJ9 254 aa28.36■■■□□ 2.13
TTC3-225ENST00000540756 SCG2P13521 617 aa28.35■■■□□ 2.13
TTC3-225ENST00000540756 PFKFB3Q16875 520 aaPredicted RBP28.35■■■□□ 2.13
TTC3-225ENST00000540756 GPKOWQ92917 476 aaPredicted RBP eCLIP28.35■■■□□ 2.133e-8■□□□□ 9.8
TTC3-225ENST00000540756 ADAMTS3O15072 1205 aa28.35■■■□□ 2.13
TTC3-225ENST00000540756 EEF2P13639 858 aaKnown RBP28.35■■■□□ 2.13
TTC3-225ENST00000540756 ABCB5Q2M3G0 1257 aa28.35■■■□□ 2.13
TTC3-225ENST00000540756 PHF20Q9BVI0 1012 aa28.35■■■□□ 2.13
TTC3-225ENST00000540756 UBA5Q9GZZ9 404 aa28.35■■■□□ 2.13
TTC3-225ENST00000540756 RCOR1Q9UKL0 485 aa28.35■■■□□ 2.13
TTC3-225ENST00000540756 GH2P01242 217 aa28.34■■■□□ 2.13
TTC3-225ENST00000540756 GNAQP50148 359 aa28.34■■■□□ 2.13
TTC3-225ENST00000540756 FAM83AQ86UY5 434 aa28.34■■■□□ 2.13
TTC3-225ENST00000540756 NPY5RQ15761 445 aa28.33■■■□□ 2.13
TTC3-225ENST00000540756 ZSCAN23Q3MJ62 389 aa28.33■■■□□ 2.13
TTC3-225ENST00000540756 NOSTRINQ8IVI9 506 aa28.33■■■□□ 2.13
TTC3-225ENST00000540756 RTEL1Q9NZ71 1219 aa28.33■■■□□ 2.13
TTC3-225ENST00000540756 HERC5Q9UII4 1024 aaKnown RBP28.33■■■□□ 2.13
TTC3-225ENST00000540756 SNHG28P0DPA3 235 aa28.32■■■□□ 2.12
TTC3-225ENST00000540756 RASA3Q14644 834 aa28.32■■■□□ 2.12
TTC3-225ENST00000540756 SAFBQ15424 915 aaKnown RBP eCLIP28.32■■■□□ 2.12
TTC3-225ENST00000540756 KANSL2Q9H9L4 492 aa28.32■■■□□ 2.12
TTC3-225ENST00000540756 VAT1LQ9HCJ6 419 aa28.32■■■□□ 2.12
TTC3-225ENST00000540756 ATL3Q6DD88 541 aa28.31■■■□□ 2.12
TTC3-225ENST00000540756 TYW1BQ6NUM6 668 aa28.31■■■□□ 2.12
TTC3-225ENST00000540756 TMEM179Q6ZVK1 233 aa28.31■■■□□ 2.12
TTC3-225ENST00000540756 GPCPD1Q9NPB8 672 aa28.31■■■□□ 2.12
TTC3-225ENST00000540756 FRMD4AQ9P2Q2 1039 aaPredicted RBP28.31■■■□□ 2.12
TTC3-225ENST00000540756 FAM205CA6NFA0 338 aa28.31■■■□□ 2.12
TTC3-225ENST00000540756 DEKP35659 375 aaKnown RBP28.31■■■□□ 2.12
TTC3-225ENST00000540756 KIF4BQ2VIQ3 1234 aa28.31■■■□□ 2.12
TTC3-225ENST00000540756 EARS2Q5JPH6 523 aaKnown RBP28.31■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms