RNA–Protein interactions for RNA: ENST00000534830.5

CLSTN3-203, Transcript of calsyntenin 3, humanhuman

TSL 4

Gene CLSTN3, Length 547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-203ENST00000534830 BADQ92934 168 aa12.18□□□□□ -0.46
CLSTN3-203ENST00000534830 DNAJC2Q99543 621 aaKnown RBP12.18□□□□□ -0.46
CLSTN3-203ENST00000534830 APBA2Q99767 749 aa12.18□□□□□ -0.46
CLSTN3-203ENST00000534830 TRIM34Q9BYJ4 488 aa12.18□□□□□ -0.46
CLSTN3-203ENST00000534830 LRRCC1Q9C099 1032 aa12.18□□□□□ -0.46
CLSTN3-203ENST00000534830 DCTPP1Q9H773 170 aa12.18□□□□□ -0.46
CLSTN3-203ENST00000534830 DCP1AQ9NPI6 582 aaPredicted RBP12.18□□□□□ -0.46
CLSTN3-203ENST00000534830 PAG1Q9NWQ8 432 aa12.18□□□□□ -0.46
CLSTN3-203ENST00000534830 TMOD4Q9NZQ9 345 aa12.18□□□□□ -0.46
CLSTN3-203ENST00000534830 HERVK_113P62684 666 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 EVX2Q03828 476 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 SLFNL1Q499Z3 407 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 MFSD14CQ5VZR4 134 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 USP17L2Q6R6M4 530 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 GPR142Q7Z601 462 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 PLEKHH3Q7Z736 793 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 LCORLQ8N3X6 602 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 SDR42E1Q8WUS8 393 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 USP6NLQ92738 828 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 PAGR1Q9BTK6 254 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 CRNKL1Q9BZJ0 848 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 PORCNQ9H237 461 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 DDX20Q9UHI6 824 aaKnown RBP12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 RLFQ13129 1914 aa12.17□□□□□ -0.46
CLSTN3-203ENST00000534830 DNM1LO00429 736 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 SMARCA5O60264 1052 aaPredicted RBP12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 CHGBP05060 677 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 ERVK-9P63128 1117 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 ERVK-24P63145 666 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 GRIN2CQ14957 1233 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 UBE3CQ15386 1083 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 ABCB5Q2M3G0 1257 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 Q3C1V9 767 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 MORN1Q5T089 497 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 PPM1EQ8WY54 764 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 LPAR1Q92633 364 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 KIAA1683Q9H0B3 1180 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 RBPJLQ9UBG7 517 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 MYO9BQ13459 2157 aa12.16□□□□□ -0.46
CLSTN3-203ENST00000534830 MSCO60682 206 aa12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 MYCNP04198 464 aaPredicted RBP12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 POLR3DP05423 398 aaPredicted RBP12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 HOXD11P31277 338 aaPredicted RBP12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 MAP2K5Q13163 448 aa12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 GJC2Q5T442 439 aaPredicted RBP12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 WDR78Q5VTH9 848 aa12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 CATSPERGQ6ZRH7 1159 aa12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 ACER1Q8TDN7 264 aa12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 GTF3C2Q8WUA4 911 aaPredicted RBP12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 RNPC3Q96LT9 517 aaKnown RBP12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 ARMT1Q9H993 441 aa12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 ATP8A2Q9NTI2 1148 aa12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 MCM9Q9NXL9 1143 aa12.15□□□□□ -0.46
CLSTN3-203ENST00000534830 PARP14Q460N5 1801 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 NCOR1O75376 2440 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 PRKAB2O43741 272 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 CNMDO75829 334 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 USP14P54578 494 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 ATP2B2Q01814 1243 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 RAB3GAP1Q15042 981 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 TRIM60Q495X7 471 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 LBX2Q6XYB7 198 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 SLC39A5Q6ZMH5 540 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 ADAMTS19Q8TE59 1207 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 DDX24Q9GZR7 859 aaKnown RBP eCLIP12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 CABP5Q9NP86 173 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 FLRT1Q9NZU1 646 aa12.14□□□□□ -0.47
CLSTN3-203ENST00000534830 A0A1W2PRG0 241 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 USP17L15C9J2P7 530 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 USP17L13C9JLJ4 530 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 KBTBD13C9JR72 458 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 USP17L11C9JVI0 530 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 USP17L18D6R9N7 530 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 USP17L22D6RA61 530 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 USP17L17D6RBQ6 530 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 USP17L19D6RCP7 530 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 USP17L20D6RJB6 530 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 GLRX3O76003 335 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 MBD4O95243 580 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 CYP2D6P10635 497 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 VCAM1P19320 739 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 USP17L24Q0WX57 530 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 SEPT2Q15019 361 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 SH3RF1Q7Z6J0 888 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 SIAH1Q8IUQ4 282 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 ARRDC4Q8NCT1 418 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 IL27Q8NEV9 243 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 ATXN2LQ8WWM7 1075 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 UHRF1Q96T88 793 aaPredicted RBP12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 PUS7LQ9H0K6 701 aaKnown RBP12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 PDLIM7Q9NR12 457 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 ECHDC1Q9NTX5 307 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 SWAP70Q9UH65 585 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 PCDHB15Q9Y5E8 787 aa12.13□□□□□ -0.47
CLSTN3-203ENST00000534830 GREB1LQ9C091 1923 aaPredicted RBP12.12□□□□□ -0.47
CLSTN3-203ENST00000534830 TRIM43BA6NCK2 446 aa12.12□□□□□ -0.47
CLSTN3-203ENST00000534830 SMIM22K7EJ46 135 aa12.12□□□□□ -0.47
CLSTN3-203ENST00000534830 DNAJB2P25686 324 aa12.12□□□□□ -0.47
CLSTN3-203ENST00000534830 CYP2C19P33261 490 aa12.12□□□□□ -0.47
CLSTN3-203ENST00000534830 C12orf60Q5U649 245 aa12.12□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms