RNA–Protein interactions for RNA: ENST00000534082.1

CD44-237, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 564 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-237ENST00000534082 TSHZ2Q9NRE2 1034 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 RBPJLQ9UBG7 517 aa8.12□□□□□ -1.11
CD44-237ENST00000534082 MYH13Q9UKX3 1938 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 USP34Q70CQ2 3546 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 PLXNA1Q9UIW2 1896 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 GRXCR2A6NFK2 248 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 SPDYE16A6NNV3 312 aaPredicted RBP8.11□□□□□ -1.11
CD44-237ENST00000534082 USP17L5A8MUK1 530 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 BHMG1C9JSJ3 638 aaPredicted RBP8.11□□□□□ -1.11
CD44-237ENST00000534082 SMIM22K7EJ46 135 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 ERC2O15083 957 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 MAP3K7O43318 606 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 GLRX3O76003 335 aaKnown RBP8.11□□□□□ -1.11
CD44-237ENST00000534082 LDHBP07195 334 aaKnown RBP8.11□□□□□ -1.11
CD44-237ENST00000534082 HOXA7P31268 230 aaPredicted RBP8.11□□□□□ -1.11
CD44-237ENST00000534082 ATP2B2Q01814 1243 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 NHLH1Q02575 133 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 PICALMQ13492 652 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 SKIV2LQ15477 1246 aaKnown RBP8.11□□□□□ -1.11
CD44-237ENST00000534082 Q3C1V9 767 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 VGLL2Q8N8G2 317 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 GTF3C2Q8WUA4 911 aaPredicted RBP8.11□□□□□ -1.11
CD44-237ENST00000534082 WNT2BQ93097 391 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 BUD13Q9BRD0 619 aaKnown RBP eCLIP8.11□□□□□ -1.11
CD44-237ENST00000534082 OSBPL5Q9H0X9 879 aaPredicted RBP8.11□□□□□ -1.11
CD44-237ENST00000534082 XPO5Q9HAV4 1204 aaKnown RBP eCLIP8.11□□□□□ -1.11
CD44-237ENST00000534082 AS3MTQ9HBK9 375 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 DDX4Q9NQI0 724 aaKnown RBP8.11□□□□□ -1.11
CD44-237ENST00000534082 PLA2G2EQ9NZK7 142 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 TMOD4Q9NZQ9 345 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 NDUFB9Q9Y6M9 179 aa8.11□□□□□ -1.11
CD44-237ENST00000534082 ATAD5Q96QE3 1844 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 GAKO14976 1311 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 PRR33A8MZF0 331 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 GRM8O00222 908 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 PQBP1O60828 265 aaKnown RBP8.1□□□□□ -1.11
CD44-237ENST00000534082 PDE8BO95263 885 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 HOXC6P09630 235 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 IFIT1P09914 478 aaKnown RBP8.1□□□□□ -1.11
CD44-237ENST00000534082 CAP2P40123 477 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 WDR43Q15061 677 aaKnown RBP eCLIP8.1□□□□□ -1.11
CD44-237ENST00000534082 LRRC41Q15345 812 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 RAB30Q15771 203 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 LRRC24Q50LG9 513 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 WDR78Q5VTH9 848 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 NKX2-4Q9H2Z4 354 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 TMEM39AQ9NV64 488 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 MYO9BQ13459 2157 aa8.1□□□□□ -1.11
CD44-237ENST00000534082 TRANK1O15050 2925 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 SLC15A5A6NIM6 579 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 SEPT4O43236 478 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 BACE1P56817 501 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 GRB14Q14449 540 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 RRP1BQ14684 758 aaKnown RBP8.09□□□□□ -1.11
CD44-237ENST00000534082 PUM3Q15397 648 aaKnown RBP8.09□□□□□ -1.11
CD44-237ENST00000534082 FAM47AQ5JRC9 791 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 BEND3Q5T5X7 828 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 RASIP1Q5U651 963 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 CCDC174Q6PII3 467 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 SLC44A5Q8NCS7 719 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 NPLOC4Q8TAT6 608 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 HERVK_113Q902F9 699 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 TSR2Q969E8 191 aaKnown RBP8.09□□□□□ -1.11
CD44-237ENST00000534082 WDR18Q9BV38 432 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 SLC28A3Q9HAS3 691 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 KIAA1468Q9P260 1216 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 MSRAQ9UJ68 235 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 PHF24Q9UPV7 400 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 CFAP54Q96N23 3096 aa8.09□□□□□ -1.11
CD44-237ENST00000534082 SALL1Q9NSC2 1324 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 F6X3S4 739 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 PI4K2BG5E9Z4 385 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 TLL1O43897 1013 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 IGHA2P01877 340 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 FGFR2P21802 821 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 BTDP43251 543 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 CCNA1P78396 465 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 PPIGQ13427 754 aaKnown RBP eCLIP8.08□□□□□ -1.12
CD44-237ENST00000534082 TSR1Q2NL82 804 aaKnown RBP8.08□□□□□ -1.12
CD44-237ENST00000534082 TWISTNBQ3B726 338 aaPredicted RBP8.08□□□□□ -1.12
CD44-237ENST00000534082 TMEM240Q5SV17 173 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 UIMC1Q96RL1 719 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 RABGEF1Q9UJ41 708 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 IVNS1ABPQ9Y6Y0 642 aa8.08□□□□□ -1.12
CD44-237ENST00000534082 A0A1W2PQ45 241 aaPredicted RBP8.07□□□□□ -1.12
CD44-237ENST00000534082 A0A1W2PQY0 241 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 CNMDO75829 334 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 TIMP1P01033 207 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 SLC5A1P13866 664 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 FAAP100Q0VG06 881 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 PPP2R2DQ66LE6 453 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 OLFML2BQ68BL8 750 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 PSRC1Q6PGN9 363 aaPredicted RBP8.07□□□□□ -1.12
CD44-237ENST00000534082 THSD4Q6ZMP0 1018 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 C16orf59Q7L2K0 433 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 DZIP1Q86YF9 867 aaKnown RBP8.07□□□□□ -1.12
CD44-237ENST00000534082 CCER1Q8TC90 406 aaPredicted RBP8.07□□□□□ -1.12
CD44-237ENST00000534082 KAZALD1Q96I82 304 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 SUCLG2Q96I99 432 aa8.07□□□□□ -1.12
CD44-237ENST00000534082 FBXL18Q96ME1 805 aa8.07□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 30.4 ms