RNA–Protein interactions for RNA: ENST00000504761.6

TCOF1-207, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 4,467 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-207ENST00000504761 CDK8P49336 464 aa15.89■□□□□ 0.13
TCOF1-207ENST00000504761 RC3H1Q5TC82 1133 aaKnown RBP15.89■□□□□ 0.13
TCOF1-207ENST00000504761 STXBP4Q6ZWJ1 553 aa15.89■□□□□ 0.13
TCOF1-207ENST00000504761 EEF2KMTQ96G04 330 aa15.89■□□□□ 0.13
TCOF1-207ENST00000504761 CTAGE1Q96RT6 745 aa15.89■□□□□ 0.13
TCOF1-207ENST00000504761 RNF26Q9BY78 433 aaPredicted RBP15.89■□□□□ 0.13
TCOF1-207ENST00000504761 USP42Q9H9J4 1324 aaKnown RBP15.89■□□□□ 0.13
TCOF1-207ENST00000504761 PCP11498 1178 aaKnown RBP15.88■□□□□ 0.13
TCOF1-207ENST00000504761 FERMT2Q96AC1 680 aa15.88■□□□□ 0.13
TCOF1-207ENST00000504761 COL5A2P05997 1499 aaPredicted RBP15.88■□□□□ 0.13
TCOF1-207ENST00000504761 FMNL1O95466 1100 aaPredicted RBP15.88■□□□□ 0.13
TCOF1-207ENST00000504761 TEX35Q5T0J7 233 aa15.88■□□□□ 0.13
TCOF1-207ENST00000504761 PCDHA1Q9Y5I3 950 aa15.88■□□□□ 0.13
TCOF1-207ENST00000504761 C3P01024 1663 aa15.88■□□□□ 0.13
TCOF1-207ENST00000504761 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.88■□□□□ 0.13
TCOF1-207ENST00000504761 CASQ1P31415 396 aa15.88■□□□□ 0.13
TCOF1-207ENST00000504761 TNNT3P45378 269 aaPredicted RBP15.88■□□□□ 0.13
TCOF1-207ENST00000504761 ZDHHC9Q9Y397 364 aa15.88■□□□□ 0.13
TCOF1-207ENST00000504761 TRAF5O00463 557 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 AOC3Q16853 763 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 CC2D2BQ6DHV5 1058 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 CABP7Q86V35 215 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 MB21D2Q8IYB1 491 aaPredicted RBP15.87■□□□□ 0.13
TCOF1-207ENST00000504761 GNL3Q9BVP2 549 aaKnown RBP eCLIP15.87■□□□□ 0.13
TCOF1-207ENST00000504761 KIF2AO00139 706 aaPredicted RBP15.87■□□□□ 0.13
TCOF1-207ENST00000504761 COA7Q96BR5 231 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 TDRD3Q9H7E2 651 aaKnown RBP15.87■□□□□ 0.13
TCOF1-207ENST00000504761 PXDNLA1KZ92 1463 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 CMA1P23946 247 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 CCDC93Q567U6 631 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 EAPPQ56P03 285 aaPredicted RBP15.87■□□□□ 0.13
TCOF1-207ENST00000504761 ZNF771Q7L3S4 317 aaPredicted RBP15.87■□□□□ 0.13
TCOF1-207ENST00000504761 PIGSQ96S52 555 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 RTEL1Q9NZ71 1219 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 DNAI1Q9UI46 699 aa15.87■□□□□ 0.13
TCOF1-207ENST00000504761 KLRK1P26718 216 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 FANCCQ00597 558 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 CETN1Q12798 172 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 RESTQ13127 1097 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 SLC39A14Q15043 492 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 VPS36Q86VN1 386 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 TXLNBQ8N3L3 684 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 SLC4A9Q96Q91 983 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 BRIP1Q9BX63 1249 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 TMOD4Q9NZQ9 345 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 TAF4BQ92750 862 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 TCHPQ9BT92 498 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 NLRP12P59046 1061 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 CEP135Q66GS9 1140 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 STAG1Q8WVM7 1258 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 ALAS1P13196 640 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 CDC27P30260 824 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 HERC4Q5GLZ8 1057 aaPredicted RBP15.86■□□□□ 0.13
TCOF1-207ENST00000504761 LINC00301Q8NCQ3 95 aa15.86■□□□□ 0.13
TCOF1-207ENST00000504761 USO1O60763 962 aaKnown RBP15.85■□□□□ 0.13
TCOF1-207ENST00000504761 NOP2P46087 812 aaKnown RBP15.85■□□□□ 0.13
TCOF1-207ENST00000504761 TNFAIP1Q13829 316 aa15.85■□□□□ 0.13
TCOF1-207ENST00000504761 PRR16Q569H4 304 aa15.85■□□□□ 0.13
TCOF1-207ENST00000504761 CTR9Q6PD62 1173 aa15.85■□□□□ 0.13
TCOF1-207ENST00000504761 ENAHQ8N8S7 591 aaPredicted RBP15.85■□□□□ 0.13
TCOF1-207ENST00000504761 DRC1Q96MC2 740 aa15.85■□□□□ 0.13
TCOF1-207ENST00000504761 TTLL1O95922 423 aa15.85■□□□□ 0.13
TCOF1-207ENST00000504761 PTF1AQ7RTS3 328 aa15.85■□□□□ 0.13
TCOF1-207ENST00000504761 GOPCQ9HD26 462 aa15.85■□□□□ 0.13
TCOF1-207ENST00000504761 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP15.85■□□□□ 0.135e-7■■■□□ 16.4
TCOF1-207ENST00000504761 GPR162Q16538 588 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 NEK8Q86SG6 692 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 NSUN4Q96CB9 384 aaKnown RBP15.84■□□□□ 0.13
TCOF1-207ENST00000504761 CSRNP2Q9H175 543 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 ZNF277Q9NRM2 450 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-207ENST00000504761 MMP1P03956 469 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 KARSQ15046 597 aaKnown RBP15.84■□□□□ 0.13
TCOF1-207ENST00000504761 CSGALNACT2Q8N6G5 542 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 CHURC1Q8WUH1 139 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 CCDC17Q96LX7 622 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 RNF216Q9NWF9 866 aaPredicted RBP15.84■□□□□ 0.13
TCOF1-207ENST00000504761 RCOR1Q9UKL0 485 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 PCDHB6Q9Y5E3 794 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 COBLO75128 1261 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 CLCN1P35523 988 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 ZNF75DP51815 510 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 UBXN2AP68543 259 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 HS2ST1Q7LGA3 356 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 MLKLQ8NB16 471 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 SYMPKQ92797 1274 aaKnown RBP15.84■□□□□ 0.13
TCOF1-207ENST00000504761 PCDHA5Q9Y5H7 936 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 BICDL2A1A5D9 508 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 CRKP46108 304 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 FBXO11Q86XK2 927 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 NELFCDQ8IXH7 590 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 CCDC65Q8IXS2 484 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 GRAMD1CQ8IYS0 662 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 TBC1D16Q8TBP0 767 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 MXD3Q9BW11 206 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 LZTFL1Q9NQ48 299 aa15.84■□□□□ 0.13
TCOF1-207ENST00000504761 SNAP25P60880 206 aa15.83■□□□□ 0.13
TCOF1-207ENST00000504761 LY9Q9HBG7 655 aa15.83■□□□□ 0.13
TCOF1-207ENST00000504761 DCAF17Q5H9S7 520 aaPredicted RBP15.83■□□□□ 0.12
TCOF1-207ENST00000504761 ACBD3Q9H3P7 528 aa15.83■□□□□ 0.12
TCOF1-207ENST00000504761 PRM3Q9NNZ6 103 aa15.83■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 24 ms