RNA–Protein interactions for RNA: ENST00000490101.1

SRM-206, Transcript of spermidine synthase, human

TSL 2

Gene SRM, Length 461 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SRM-206	ENST00000490101	ROBO3	Q96MS0	1386 aa		21.39	■■□□□ 1.02
SRM-206	ENST00000490101	ATAD5	Q96QE3	1844 aa		21.39	■■□□□ 1.02
SRM-206	ENST00000490101	SLC3A2	P08195	630 aa	Known RBP	21.39	■■□□□ 1.01
SRM-206	ENST00000490101	CYP2D6	P10635	497 aa		21.39	■■□□□ 1.01
SRM-206	ENST00000490101	CPA1	P15085	419 aa		21.39	■■□□□ 1.01
SRM-206	ENST00000490101	MCM2	P49736	904 aa		21.39	■■□□□ 1.01
SRM-206	ENST00000490101	EXOSC10	Q01780	885 aa	Known RBP	21.39	■■□□□ 1.01
SRM-206	ENST00000490101	SPP2	Q13103	211 aa		21.39	■■□□□ 1.01
SRM-206	ENST00000490101	COL9A3	Q14050	684 aa	Predicted RBP	21.39	■■□□□ 1.01
SRM-206	ENST00000490101	RRP1B	Q14684	758 aa	Known RBP	21.39	■■□□□ 1.01
SRM-206	ENST00000490101	MFSD6	Q6ZSS7	791 aa		21.39	■■□□□ 1.01
SRM-206	ENST00000490101	DHX32	Q7L7V1	743 aa	Known RBP	21.39	■■□□□ 1.01
SRM-206	ENST00000490101	MB21D2	Q8IYB1	491 aa	Predicted RBP	21.39	■■□□□ 1.01
SRM-206	ENST00000490101	TBC1D2	Q9BYX2	928 aa		21.39	■■□□□ 1.01
SRM-206	ENST00000490101	PDRG1	Q9NUG6	133 aa		21.39	■■□□□ 1.01
SRM-206	ENST00000490101	SAP30BP	Q9UHR5	308 aa	Known RBP	21.39	■■□□□ 1.01
SRM-206	ENST00000490101	WDR19	Q8NEZ3	1342 aa		21.38	■■□□□ 1.01
SRM-206	ENST00000490101	CD2BP2	O95400	341 aa	Known RBP	21.38	■■□□□ 1.01
SRM-206	ENST00000490101	POLR3D	P05423	398 aa	Predicted RBP	21.38	■■□□□ 1.01
SRM-206	ENST00000490101	RALYL	Q86SE5	291 aa	Known RBP	21.38	■■□□□ 1.01
SRM-206	ENST00000490101	KRT23	Q9C075	422 aa		21.38	■■□□□ 1.01
SRM-206	ENST00000490101	DDX52	Q9Y2R4	599 aa	Known RBP eCLIP	21.38	■■□□□ 1.01
SRM-206	ENST00000490101	MYH1	P12882	1939 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	SMIM22	K7EJ46	135 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	ORC4	O43929	436 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	CCL5	P13501	91 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	CAP2	P40123	477 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	NT5C2	P49902	561 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	HMGCS2	P54868	508 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	TTC6	Q86TZ1	520 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	HSCB	Q8IWL3	235 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	ANKRD13C	Q8N6S4	541 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	ZNF280C	Q8ND82	737 aa		21.37	■■□□□ 1.01
SRM-206	ENST00000490101	HERC5	Q9UII4	1024 aa	Known RBP	21.37	■■□□□ 1.01
SRM-206	ENST00000490101	NEDD4	P46934	1319 aa		21.36	■■□□□ 1.01
SRM-206	ENST00000490101	TNPO2	O14787	897 aa	Known RBP	21.36	■■□□□ 1.01
SRM-206	ENST00000490101	MCM5	P33992	734 aa		21.36	■■□□□ 1.01
SRM-206	ENST00000490101	PLCD1	P51178	756 aa		21.36	■■□□□ 1.01
SRM-206	ENST00000490101	UBXN2A	P68543	259 aa		21.36	■■□□□ 1.01
SRM-206	ENST00000490101	PROCA1	Q8NCQ7	364 aa	Predicted RBP	21.36	■■□□□ 1.01
SRM-206	ENST00000490101	SHISA4	Q96DD7	197 aa		21.36	■■□□□ 1.01
SRM-206	ENST00000490101	RNF208	Q9H0X6	261 aa		21.36	■■□□□ 1.01
SRM-206	ENST00000490101	INCENP	Q9NQS7	918 aa		21.36	■■□□□ 1.01
SRM-206	ENST00000490101	PI4KB	Q9UBF8	816 aa		21.36	■■□□□ 1.01
SRM-206	ENST00000490101	PNMA3	Q9UL41	463 aa		21.36	■■□□□ 1.01
SRM-206	ENST00000490101	TAOK2	Q9UL54	1235 aa		21.36	■■□□□ 1.01
SRM-206	ENST00000490101	SIPA1L1	O43166	1804 aa		21.35	■■□□□ 1.01
SRM-206	ENST00000490101	USP17L5	A8MUK1	530 aa		21.35	■■□□□ 1.01
SRM-206	ENST00000490101	AK2	P54819	239 aa		21.35	■■□□□ 1.01
SRM-206	ENST00000490101	EVX2	Q03828	476 aa		21.35	■■□□□ 1.01
SRM-206	ENST00000490101	PDE4B	Q07343	736 aa		21.35	■■□□□ 1.01
SRM-206	ENST00000490101	ANKRD1	Q15327	319 aa		21.35	■■□□□ 1.01
SRM-206	ENST00000490101	FBXL16	Q8N461	479 aa		21.35	■■□□□ 1.01
SRM-206	ENST00000490101	CRACR2B	Q8N4Y2	399 aa	Predicted RBP	21.35	■■□□□ 1.01
SRM-206	ENST00000490101	SLAIN1	Q8ND83	568 aa		21.35	■■□□□ 1.01
SRM-206	ENST00000490101	TRIM34	Q9BYJ4	488 aa		21.35	■■□□□ 1.01
SRM-206	ENST00000490101	DHX36	Q9H2U1	1008 aa	Known RBP	21.35	■■□□□ 1.01
SRM-206	ENST00000490101	LOC285556	D6RIA3	1793 aa		21.35	■■□□□ 1.01
SRM-206	ENST00000490101		B4E1Z4	1266 aa		21.34	■■□□□ 1.01
SRM-206	ENST00000490101		K7ELQ4	463 aa	Predicted RBP	21.34	■■□□□ 1.01
SRM-206	ENST00000490101	ADCY3	O60266	1144 aa		21.34	■■□□□ 1.01
SRM-206	ENST00000490101	ELN	P15502	786 aa		21.34	■■□□□ 1.01
SRM-206	ENST00000490101	FLT3LG	P49771	235 aa		21.34	■■□□□ 1.01
SRM-206	ENST00000490101	HABP4	Q5JVS0	413 aa	Known RBP	21.34	■■□□□ 1.01
SRM-206	ENST00000490101	AGXT2	Q9BYV1	514 aa		21.34	■■□□□ 1.01
SRM-206	ENST00000490101	AS3MT	Q9HBK9	375 aa		21.34	■■□□□ 1.01
SRM-206	ENST00000490101	PRC1	O43663	620 aa		21.33	■■□□□ 1.01
SRM-206	ENST00000490101	ANTXR2	P58335	489 aa		21.33	■■□□□ 1.01
SRM-206	ENST00000490101	C16orf86	Q6ZW13	317 aa		21.33	■■□□□ 1.01
SRM-206	ENST00000490101	ESR2	Q92731	530 aa		21.33	■■□□□ 1.01
SRM-206	ENST00000490101	MTA3	Q9BTC8	594 aa		21.33	■■□□□ 1.01
SRM-206	ENST00000490101	ZNF287	Q9HBT7	754 aa		21.33	■■□□□ 1.01
SRM-206	ENST00000490101	ZSWIM5	Q9P217	1185 aa		21.33	■■□□□ 1.01
SRM-206	ENST00000490101	KDM4A	O75164	1064 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	GDF11	O95390	407 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	HLA-DOA	P06340	250 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	GJB1	P08034	283 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	GABPA	Q06546	454 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	PABPC4	Q13310	644 aa	Known RBP eCLIP	21.32	■■□□□ 1	1e-18	■□□□□ 9.5
SRM-206	ENST00000490101	MTMR2	Q13614	643 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	TOB2	Q14106	344 aa	Predicted RBP	21.32	■■□□□ 1
SRM-206	ENST00000490101	FAM110C	Q1W6H9	321 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	SHROOM1	Q2M3G4	852 aa	Predicted RBP	21.32	■■□□□ 1
SRM-206	ENST00000490101	CYB5R4	Q7L1T6	521 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	STK11IP	Q8N1F8	1099 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	NKX2-3	Q8TAU0	364 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	COA7	Q96BR5	231 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	DYNLL2	Q96FJ2	89 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	TCEANC2	Q96MN5	208 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	UNC93B1	Q9H1C4	597 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	EHD4	Q9H223	541 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	DNAJC18	Q9H819	358 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	TOMM22	Q9NS69	142 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	LIMCH1	Q9UPQ0	1083 aa		21.32	■■□□□ 1
SRM-206	ENST00000490101	GJA8	P48165	433 aa		21.31	■■□□□ 1
SRM-206	ENST00000490101	JAG1	P78504	1218 aa		21.31	■■□□□ 1
SRM-206	ENST00000490101	RRP12	Q5JTH9	1297 aa	Known RBP	21.31	■■□□□ 1
SRM-206	ENST00000490101		Q6ZUG5	572 aa		21.31	■■□□□ 1
SRM-206	ENST00000490101	TMEM87B	Q96K49	555 aa		21.31	■■□□□ 1
SRM-206	ENST00000490101	ASCC2	Q9H1I8	757 aa	Predicted RBP	21.31	■■□□□ 1

Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms