RNA–Protein interactions for RNA: ENST00000485550.5

HMGN1-215, Transcript of high mobility group nucleosome binding domain 1, human

TSL 5

Gene HMGN1, Length 745 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HMGN1-215	ENST00000485550	ZBTB40	Q9NUA8	1239 aa		12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	FLRT1	Q9NZU1	646 aa		12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	ZBTB21	Q9ULJ3	1066 aa		12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	DDX19B	Q9UMR2	479 aa		12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	ATP11B	Q9Y2G3	1177 aa		12.84	□□□□□ -0.35
HMGN1-215	ENST00000485550	USP17L10	C9JJH3	530 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	GOLIM4	O00461	696 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	IGSF3	O75054	1194 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	HMMR	O75330	724 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	GH2	P01242	217 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	IFIT2	P09913	472 aa	Known RBP	12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	FOSL2	P15408	326 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	COL9A1	P20849	921 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	ZYX	Q15942	572 aa	Known RBP	12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	SLC9C2	Q5TAH2	1124 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	WDR78	Q5VTH9	848 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	ASTL	Q6HA08	431 aa	Predicted RBP	12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	POTEE	Q6S8J3	1075 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	KIF1BP	Q96EK5	621 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	EDC3	Q96F86	508 aa	Known RBP	12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	PRDM5	Q9NQX1	630 aa	Predicted RBP	12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	RAPGEFL1	Q9UHV5	662 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	RCAN3	Q9UKA8	241 aa		12.83	□□□□□ -0.36
HMGN1-215	ENST00000485550	MAGEB6P1	A0A0J9YX57	407 aa		12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	C19orf81	C9J6K1	198 aa		12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	ATMIN	O43313	823 aa	Predicted RBP	12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	POLR3D	P05423	398 aa	Predicted RBP	12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	PLCD1	P51178	756 aa		12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	MAP2K5	Q13163	448 aa		12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	SYMPK	Q92797	1274 aa	Known RBP	12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	BAD	Q92934	168 aa		12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	RIOK1	Q9BRS2	568 aa	Known RBP	12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	EMILIN3	Q9NT22	766 aa		12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	DDX20	Q9UHI6	824 aa	Known RBP	12.82	□□□□□ -0.36
HMGN1-215	ENST00000485550	TCF20	Q9UGU0	1960 aa	Known RBP	12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	PLXNA1	Q9UIW2	1896 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	PDE6A	P16499	860 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	RAB3GAP1	Q15042	981 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	TTF1	Q15361	905 aa	Predicted RBP	12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	SLFNL1	Q499Z3	407 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	GJC2	Q5T442	439 aa	Predicted RBP	12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	C20orf194	Q5TEA3	1177 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	MFSD14C	Q5VZR4	134 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	TATDN1	Q6P1N9	297 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	TTC6	Q86TZ1	520 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	CERS3	Q8IU89	383 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	RASEF	Q8IZ41	740 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	LPAR1	Q92633	364 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	BOLA2	Q9H3K6	86 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	SERPINB13	Q9UIV8	391 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	ZNF532	Q9HCE3	1301 aa		12.81	□□□□□ -0.36
HMGN1-215	ENST00000485550	DNM1L	O00429	736 aa		12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	RAB11FIP3	O75154	756 aa		12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	CNMD	O75829	334 aa		12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	CYP2C19	P33261	490 aa		12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	CERKL	Q49MI3	558 aa	Predicted RBP	12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	ANO1	Q5XXA6	986 aa		12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	ACER1	Q8TDN7	264 aa		12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	SDR42E1	Q8WUS8	393 aa		12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	KIF12	Q96FN5	646 aa		12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	GINM1	Q9NU53	330 aa		12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	MCM9	Q9NXL9	1143 aa		12.8	□□□□□ -0.36
HMGN1-215	ENST00000485550	SMARCA5	O60264	1052 aa	Predicted RBP	12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	SMAD3	P84022	425 aa	Known RBP	12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	ATP2B2	Q01814	1243 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	ABCB5	Q2M3G0	1257 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	USP17L2	Q6R6M4	530 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	SLC39A5	Q6ZMH5	540 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	SH3RF1	Q7Z6J0	888 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	LCORL	Q8N3X6	602 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	USP38	Q8NB14	1042 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	TRPV1	Q8NER1	839 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	NPLOC4	Q8TAT6	608 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	GTF3C2	Q8WUA4	911 aa	Predicted RBP	12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	FEZ1	Q99689	392 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	CRNKL1	Q9BZJ0	848 aa	Known RBP	12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	EHD4	Q9H223	541 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	ARMT1	Q9H993	441 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	CABP5	Q9NP86	173 aa		12.79	□□□□□ -0.36
HMGN1-215	ENST00000485550	MUC3A	Q02505	3323 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	TCRBV5S4A2T	A0A5A2	114 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	SLC15A5	A6NIM6	579 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	MPHOSPH10	O00566	681 aa	Known RBP	12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	PRKAB2	O43741	272 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	MSC	O60682	206 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	CHGB	P05060	677 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	CYP2D6	P10635	497 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	SHMT1	P34896	483 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	TRIM60	Q495X7	471 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	CHMP4B	Q9H444	224 aa	Known RBP	12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	PAG1	Q9NWQ8	432 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	GBF1	Q92538	1859 aa		12.78	□□□□□ -0.36
HMGN1-215	ENST00000485550	COL11A1	P12107	1806 aa	Predicted RBP	12.77	□□□□□ -0.37
HMGN1-215	ENST00000485550	TRIM43B	A6NCK2	446 aa		12.77	□□□□□ -0.37
HMGN1-215	ENST00000485550	KBTBD13	C9JR72	458 aa		12.77	□□□□□ -0.37
HMGN1-215	ENST00000485550	TNFRSF10A	O00220	468 aa		12.77	□□□□□ -0.37
HMGN1-215	ENST00000485550	GLRX3	O76003	335 aa	Known RBP	12.77	□□□□□ -0.37
HMGN1-215	ENST00000485550	CYBA	P13498	195 aa		12.77	□□□□□ -0.37
HMGN1-215	ENST00000485550	PTPRE	P23469	700 aa		12.77	□□□□□ -0.37

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