RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 PDCLQ13371 301 aa9.89□□□□□ -0.83
COL6A3-210ENST00000473258 RCN1Q15293 331 aa9.89□□□□□ -0.83
COL6A3-210ENST00000473258 GEN1Q17RS7 908 aa9.89□□□□□ -0.83
COL6A3-210ENST00000473258 TRIM16LQ309B1 348 aa9.89□□□□□ -0.83
COL6A3-210ENST00000473258 KMT5BQ4FZB7 885 aa9.89□□□□□ -0.83
COL6A3-210ENST00000473258 TMTC3Q6ZXV5 915 aa9.89□□□□□ -0.83
COL6A3-210ENST00000473258 MSL3Q8N5Y2 521 aaKnown RBP9.89□□□□□ -0.83
COL6A3-210ENST00000473258 IL17RAQ96F46 866 aa9.89□□□□□ -0.83
COL6A3-210ENST00000473258 LRRC27Q9C0I9 530 aa9.89□□□□□ -0.83
COL6A3-210ENST00000473258 ZCCHC17Q9NP64 241 aaKnown RBP9.89□□□□□ -0.83
COL6A3-210ENST00000473258 RIC3Q7Z5B4 369 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 MCF2L2Q86YR7 1114 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 PROCA1Q8NCQ7 364 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-210ENST00000473258 PPP4R1Q8TF05 950 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 PSMB7Q99436 277 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 FBXO9Q9UK97 447 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-210ENST00000473258 ZMYND8Q9ULU4 1186 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-210ENST00000473258 TCP1P17987 556 aaKnown RBP9.88□□□□□ -0.83
COL6A3-210ENST00000473258 SLC9C1Q4G0N8 1177 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 CC2D2BQ6DHV5 1058 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 ANO5Q75V66 913 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 ANKRD2Q9GZV1 360 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 LRPAP1P30533 357 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 KRT2P35908 639 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 ADCY2Q08462 1091 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 SCRN1Q12765 414 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 PPP2R5EQ16537 467 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 RILPL1Q5EBL4 403 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 KIF6Q6ZMV9 814 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 FCHSD1Q86WN1 690 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 FAM81AQ8TBF8 368 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 SLF1Q9BQI6 1058 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 SUCLA2Q9P2R7 463 aaPredicted RBP9.88□□□□□ -0.83
COL6A3-210ENST00000473258 KRT9P35527 623 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 C1orf141Q5JVX7 400 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 POTEEQ6S8J3 1075 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 RNF169Q8NCN4 708 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 FERMT2Q96AC1 680 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 CATSPER2Q96P56 530 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 KRT82Q9NSB4 513 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 CCDC87Q9NVE4 849 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 DLGAP2Q9P1A6 1054 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 CEP126Q9P2H0 1117 aa9.88□□□□□ -0.83
COL6A3-210ENST00000473258 RRBP1Q9P2E9 1410 aaKnown RBP9.87□□□□□ -0.83
COL6A3-210ENST00000473258 ERBB4Q15303 1308 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 TTF1Q15361 905 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-210ENST00000473258 RPS6KA1Q15418 735 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 NOP9Q86U38 636 aaKnown RBP9.87□□□□□ -0.83
COL6A3-210ENST00000473258 TRIM74Q86UV6 250 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 TRIM73Q86UV7 250 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 SYBUQ9NX95 663 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 HYOU1Q9Y4L1 999 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 VIL1P09327 827 aaKnown RBP9.87□□□□□ -0.83
COL6A3-210ENST00000473258 ESRRAP11474 423 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-210ENST00000473258 MAGEA1P43355 309 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 ITIH3Q06033 890 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 SSRP1Q08945 709 aaKnown RBP9.87□□□□□ -0.83
COL6A3-210ENST00000473258 MTX1Q13505 466 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 NONOQ15233 471 aaKnown RBP eCLIP9.87□□□□□ -0.83
COL6A3-210ENST00000473258 CC2D1AQ6P1N0 951 aaPredicted RBP9.87□□□□□ -0.83
COL6A3-210ENST00000473258 NECAB1Q8N987 351 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 ATP11CQ8NB49 1132 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 ITFG2Q969R8 447 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 CCDC51Q96ER9 411 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 FAM81BQ96LP2 452 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 NRDE2Q9H7Z3 1164 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 PDP2Q9P2J9 529 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 EXOC6BQ9Y2D4 811 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 PARP3Q9Y6F1 533 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 NBNO60934 754 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 SERPINB10P48595 397 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 TUBA3CQ13748 450 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 CDH24Q86UP0 819 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 NUDCD1Q96RS6 583 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 TRIM39Q9HCM9 518 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 AMOTL2Q9Y2J4 779 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 PPP1R13BQ96KQ4 1090 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 QKIQ96PU8 341 aaKnown RBP eCLIP9.87□□□□□ -0.83
COL6A3-210ENST00000473258 TRAF3IP3Q9Y228 551 aa9.87□□□□□ -0.83
COL6A3-210ENST00000473258 GSTA2P09210 222 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 SLFN14P0C7P3 912 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 KIF11P52732 1056 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 ATL3Q6DD88 541 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 FAM133AQ8N9E0 248 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 XPO4Q9C0E2 1151 aaKnown RBP9.86□□□□□ -0.83
COL6A3-210ENST00000473258 OLFML3Q9NRN5 406 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 E7ENQ6 273 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 MAPK13O15264 365 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 PHKBQ93100 1093 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 KIF1BPQ96EK5 621 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 MAK16Q9BXY0 300 aaKnown RBP9.86□□□□□ -0.83
COL6A3-210ENST00000473258 MRPS26Q9BYN8 205 aaKnown RBP9.86□□□□□ -0.83
COL6A3-210ENST00000473258 ABCB6Q9NP58 842 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 NDUFA13Q9P0J0 144 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 CCND1P24385 295 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 GRK2P25098 689 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 IARSP41252 1262 aaKnown RBP9.86□□□□□ -0.83
COL6A3-210ENST00000473258 SNX16P57768 344 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 STX1BP61266 288 aa9.86□□□□□ -0.83
COL6A3-210ENST00000473258 AP1B1Q10567 949 aa9.86□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms