RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 MYT1Q01538 1121 aa15.56■□□□□ 0.08
COL6A3-210ENST00000473258 PELP1Q8IZL8 1130 aaKnown RBP15.42■□□□□ 0.06
COL6A3-210ENST00000473258 TTBK1Q5TCY1 1321 aaPredicted RBP14.55□□□□□ -0.08
COL6A3-210ENST00000473258 ERICH6Q7L0X2 663 aa14.53□□□□□ -0.08
COL6A3-210ENST00000473258 CCER1Q8TC90 406 aaPredicted RBP14.35□□□□□ -0.11
COL6A3-210ENST00000473258 CENPBP07199 599 aaPredicted RBP14.32□□□□□ -0.12
COL6A3-210ENST00000473258 YTHDC1Q96MU7 727 aaKnown RBP13.97□□□□□ -0.17
COL6A3-210ENST00000473258 ZEB1P37275 1124 aaPredicted RBP13.79□□□□□ -0.2
COL6A3-210ENST00000473258 NEFLP07196 543 aa13.74□□□□□ -0.21
COL6A3-210ENST00000473258 PCGF6Q9BYE7 350 aa13.72□□□□□ -0.21
COL6A3-210ENST00000473258 RTL5Q5HYW3 569 aaPredicted RBP13.57□□□□□ -0.24
COL6A3-210ENST00000473258 GLIPR1L2Q4G1C9 344 aa13.52□□□□□ -0.25
COL6A3-210ENST00000473258 DAXXQ9UER7 740 aaPredicted RBP13.46□□□□□ -0.26
COL6A3-210ENST00000473258 HRCP23327 699 aa13.42□□□□□ -0.26
COL6A3-210ENST00000473258 EIF5BO60841 1220 aaKnown RBP13.42□□□□□ -0.26
COL6A3-210ENST00000473258 SUPT5HO00267 1087 aaKnown RBP13.41□□□□□ -0.26
COL6A3-210ENST00000473258 RANGAP1P46060 587 aaPredicted RBP13.22□□□□□ -0.29
COL6A3-210ENST00000473258 GTF3C3Q9Y5Q9 886 aa13.18□□□□□ -0.3
COL6A3-210ENST00000473258 DCAF8L2P0C7V8 631 aa13.15□□□□□ -0.3
COL6A3-210ENST00000473258 MYT1LQ9UL68 1186 aa13.13□□□□□ -0.31
COL6A3-210ENST00000473258 APLP2Q06481 763 aa13.13□□□□□ -0.31
COL6A3-210ENST00000473258 EHMT2Q96KQ7 1210 aa13.12□□□□□ -0.31
COL6A3-210ENST00000473258 ZNF316A6NFI3 1004 aaPredicted RBP13.11□□□□□ -0.31
COL6A3-210ENST00000473258 FAM9AQ8IZU1 332 aaPredicted RBP13.07□□□□□ -0.32
COL6A3-210ENST00000473258 BCL11AQ9H165 835 aa13□□□□□ -0.33
COL6A3-210ENST00000473258 PPARGC1BQ86YN6 1023 aaKnown RBP12.98□□□□□ -0.33
COL6A3-210ENST00000473258 ACIN1Q9UKV3 1341 aaKnown RBP12.93□□□□□ -0.34
COL6A3-210ENST00000473258 CDK11AQ9UQ88 783 aaPredicted RBP12.91□□□□□ -0.34
COL6A3-210ENST00000473258 SLC24A1O60721 1099 aa12.9□□□□□ -0.34
COL6A3-210ENST00000473258 TRIM26Q12899 539 aaPredicted RBP12.89□□□□□ -0.35
COL6A3-210ENST00000473258 DIEXFQ68CQ4 756 aaKnown RBP12.89□□□□□ -0.35
COL6A3-210ENST00000473258 BCANQ96GW7 911 aa12.83□□□□□ -0.36
COL6A3-210ENST00000473258 ANP32EQ9BTT0 268 aa12.79□□□□□ -0.36
COL6A3-210ENST00000473258 CLSPNQ9HAW4 1339 aa12.78□□□□□ -0.36
COL6A3-210ENST00000473258 TNNT2P45379 298 aaPredicted RBP12.76□□□□□ -0.37
COL6A3-210ENST00000473258 ANP32AP39687 249 aaKnown RBP12.76□□□□□ -0.37
COL6A3-210ENST00000473258 CDK11BP21127 795 aaKnown RBP12.68□□□□□ -0.38
COL6A3-210ENST00000473258 ANP32BQ92688 251 aaKnown RBP12.67□□□□□ -0.38
COL6A3-210ENST00000473258 SCAF1Q9H7N4 1312 aaKnown RBP12.64□□□□□ -0.39
COL6A3-210ENST00000473258 NBR1Q14596 966 aa12.61□□□□□ -0.39
COL6A3-210ENST00000473258 NCLP19338 710 aaKnown RBP12.59□□□□□ -0.39
COL6A3-210ENST00000473258 SHROOM4Q9ULL8 1493 aa12.56□□□□□ -0.4
COL6A3-210ENST00000473258 ERICH6BQ5W0A0 696 aa12.53□□□□□ -0.4
COL6A3-210ENST00000473258 TRIM44Q96DX7 344 aaPredicted RBP12.53□□□□□ -0.4
COL6A3-210ENST00000473258 PRKCSHP14314 528 aaPredicted RBP12.51□□□□□ -0.41
COL6A3-210ENST00000473258 ZBTB47Q9UFB7 747 aaPredicted RBP12.49□□□□□ -0.41
COL6A3-210ENST00000473258 RTN4Q9NQC3 1192 aaKnown RBP12.49□□□□□ -0.41
COL6A3-210ENST00000473258 POLR3GLQ9BT43 218 aa12.48□□□□□ -0.41
COL6A3-210ENST00000473258 NPM2Q86SE8 214 aaKnown RBP12.48□□□□□ -0.41
COL6A3-210ENST00000473258 NEUROD1Q13562 356 aa12.46□□□□□ -0.42
COL6A3-210ENST00000473258 NAP1L5Q96NT1 182 aaPredicted RBP12.43□□□□□ -0.42
COL6A3-210ENST00000473258 PODXL2Q9NZ53 605 aa12.4□□□□□ -0.42
COL6A3-210ENST00000473258 ZNF326Q5BKZ1 582 aaKnown RBP12.4□□□□□ -0.43
COL6A3-210ENST00000473258 AMER1Q5JTC6 1135 aaPredicted RBP12.4□□□□□ -0.43
COL6A3-210ENST00000473258 FKBP8Q14318 412 aa12.39□□□□□ -0.43
COL6A3-210ENST00000473258 NEFMP07197 916 aa12.38□□□□□ -0.43
COL6A3-210ENST00000473258 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP12.36□□□□□ -0.43
COL6A3-210ENST00000473258 ARXQ96QS3 562 aa12.33□□□□□ -0.44
COL6A3-210ENST00000473258 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.33□□□□□ -0.44
COL6A3-210ENST00000473258 TRIM41Q8WV44 630 aa12.32□□□□□ -0.44
COL6A3-210ENST00000473258 DEKP35659 375 aaKnown RBP12.3□□□□□ -0.44
COL6A3-210ENST00000473258 CNGB1Q14028 1251 aaPredicted RBP12.27□□□□□ -0.44
COL6A3-210ENST00000473258 VSIG10Q8N0Z9 540 aa12.27□□□□□ -0.44
COL6A3-210ENST00000473258 ANP32CO43423 234 aa12.27□□□□□ -0.45
COL6A3-210ENST00000473258 HSP90AA1P07900 732 aaKnown RBP12.26□□□□□ -0.45
COL6A3-210ENST00000473258 PKNOX2Q96KN3 472 aa12.26□□□□□ -0.45
COL6A3-210ENST00000473258 CSRNP3Q8WYN3 585 aa12.24□□□□□ -0.45
COL6A3-210ENST00000473258 A0A0U1RQG5 324 aaPredicted RBP12.22□□□□□ -0.45
COL6A3-210ENST00000473258 UBTFP17480 764 aaKnown RBP12.22□□□□□ -0.45
COL6A3-210ENST00000473258 PTMSP20962 102 aa12.2□□□□□ -0.46
COL6A3-210ENST00000473258 PPM1GO15355 546 aaPredicted RBP12.2□□□□□ -0.46
COL6A3-210ENST00000473258 CCDC136Q96JN2 1154 aa12.2□□□□□ -0.46
COL6A3-210ENST00000473258 UPF2Q9HAU5 1272 aaKnown RBP12.19□□□□□ -0.46
COL6A3-210ENST00000473258 HNRNPUL2Q1KMD3 747 aaKnown RBP12.18□□□□□ -0.46
COL6A3-210ENST00000473258 TNNT3P45378 269 aaPredicted RBP12.17□□□□□ -0.46
COL6A3-210ENST00000473258 DNTTIP2Q5QJE6 756 aaKnown RBP12.13□□□□□ -0.47
COL6A3-210ENST00000473258 DDRGK1Q96HY6 314 aa12.12□□□□□ -0.47
COL6A3-210ENST00000473258 HSP90AA2PQ14568 343 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-210ENST00000473258 ATP1B4Q9UN42 357 aaPredicted RBP12.12□□□□□ -0.47
COL6A3-210ENST00000473258 RSPH6AQ9H0K4 717 aa12.09□□□□□ -0.47
COL6A3-210ENST00000473258 NOP58Q9Y2X3 529 aaKnown RBP12.09□□□□□ -0.47
COL6A3-210ENST00000473258 CALRP27797 417 aaKnown RBP12.08□□□□□ -0.48
COL6A3-210ENST00000473258 ITGAEP38570 1179 aa12.07□□□□□ -0.48
COL6A3-210ENST00000473258 PNNQ9H307 717 aaKnown RBP12.07□□□□□ -0.48
COL6A3-210ENST00000473258 ARID4BQ4LE39 1312 aaPredicted RBP12.06□□□□□ -0.48
COL6A3-210ENST00000473258 LOC105371045A0A1W2PR82 267 aa12.05□□□□□ -0.48
COL6A3-210ENST00000473258 PTMAP06454 111 aaKnown RBP12.05□□□□□ -0.48
COL6A3-210ENST00000473258 APPP05067 770 aa12.04□□□□□ -0.48
COL6A3-210ENST00000473258 CANXP27824 592 aaKnown RBP12.04□□□□□ -0.48
COL6A3-210ENST00000473258 BECN1Q14457 450 aa12□□□□□ -0.49
COL6A3-210ENST00000473258 L1TD1Q5T7N2 865 aaKnown RBP12□□□□□ -0.49
COL6A3-210ENST00000473258 LAS1LQ9Y4W2 734 aaKnown RBP11.98□□□□□ -0.49
COL6A3-210ENST00000473258 GOLGA6L22H0YM25 854 aa11.98□□□□□ -0.49
COL6A3-210ENST00000473258 HNRNPUQ00839 825 aaKnown RBP eCLIP11.96□□□□□ -0.5
COL6A3-210ENST00000473258 MSNP26038 577 aaKnown RBP11.95□□□□□ -0.5
COL6A3-210ENST00000473258 CHAF1AQ13111 956 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-210ENST00000473258 ANO8Q9HCE9 1232 aaPredicted RBP11.93□□□□□ -0.5
COL6A3-210ENST00000473258 PDE4CQ08493 712 aa11.92□□□□□ -0.5
COL6A3-210ENST00000473258 RBM19Q9Y4C8 960 aaKnown RBP11.91□□□□□ -0.5
COL6A3-210ENST00000473258 ARID3AQ99856 593 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms