RNA–Protein interactions for RNA: ENST00000465591.1

LIME1-203, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 2

Gene LIME1, Length 680 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-203ENST00000465591 TMX2Q9Y320 296 aa26.07■■□□□ 1.76
LIME1-203ENST00000465591 FOXP2O15409 715 aa26.06■■□□□ 1.76
LIME1-203ENST00000465591 APPP05067 770 aa26.06■■□□□ 1.76
LIME1-203ENST00000465591 TDO2P48775 406 aa26.06■■□□□ 1.76
LIME1-203ENST00000465591 UBXN2AP68543 259 aa26.06■■□□□ 1.76
LIME1-203ENST00000465591 ARHGEF10LQ9HCE6 1279 aa26.06■■□□□ 1.76
LIME1-203ENST00000465591 BTBD7Q9P203 1132 aa26.06■■□□□ 1.76
LIME1-203ENST00000465591 RABGAP1Q9Y3P9 1069 aa26.06■■□□□ 1.76
LIME1-203ENST00000465591 A0A0G2JMZ2 1700 aa26.05■■□□□ 1.76
LIME1-203ENST00000465591 EEF2P13639 858 aaKnown RBP26.05■■□□□ 1.76
LIME1-203ENST00000465591 LBX2Q6XYB7 198 aa26.05■■□□□ 1.76
LIME1-203ENST00000465591 SPICE1Q8N0Z3 855 aa26.05■■□□□ 1.76
LIME1-203ENST00000465591 EVI5LQ96CN4 794 aa26.05■■□□□ 1.76
LIME1-203ENST00000465591 RNF208Q9H0X6 261 aa26.05■■□□□ 1.76
LIME1-203ENST00000465591 VCPKMTQ9H867 229 aa26.04■■□□□ 1.76
LIME1-203ENST00000465591 GJB1P08034 283 aa26.03■■□□□ 1.76
LIME1-203ENST00000465591 MAPK4P31152 587 aa26.03■■□□□ 1.76
LIME1-203ENST00000465591 ATP2B2Q01814 1243 aa26.03■■□□□ 1.76
LIME1-203ENST00000465591 TRIM32Q13049 653 aa26.03■■□□□ 1.76
LIME1-203ENST00000465591 GPR142Q7Z601 462 aa26.03■■□□□ 1.76
LIME1-203ENST00000465591 CHD1LQ86WJ1 897 aa26.03■■□□□ 1.76
LIME1-203ENST00000465591 TANGO6Q9C0B7 1094 aa26.03■■□□□ 1.76
LIME1-203ENST00000465591 KANSL2Q9H9L4 492 aa26.03■■□□□ 1.76
LIME1-203ENST00000465591 PRDM1O75626 825 aa26.02■■□□□ 1.76
LIME1-203ENST00000465591 CYP2B6P20813 491 aa26.02■■□□□ 1.76
LIME1-203ENST00000465591 NUCB1Q02818 461 aa26.02■■□□□ 1.76
LIME1-203ENST00000465591 USP6NLQ92738 828 aa26.02■■□□□ 1.76
LIME1-203ENST00000465591 MKNK2Q9HBH9 465 aa26.02■■□□□ 1.76
LIME1-203ENST00000465591 MYH4Q9Y623 1939 aa26.02■■□□□ 1.76
LIME1-203ENST00000465591 GJA8P48165 433 aa26.01■■□□□ 1.75
LIME1-203ENST00000465591 IRX6P78412 446 aaPredicted RBP26.01■■□□□ 1.75
LIME1-203ENST00000465591 COG2Q14746 738 aa26.01■■□□□ 1.75
LIME1-203ENST00000465591 PLEKHM2Q8IWE5 1019 aa26.01■■□□□ 1.75
LIME1-203ENST00000465591 TRIB2Q92519 343 aa26.01■■□□□ 1.75
LIME1-203ENST00000465591 LPAR1Q92633 364 aa26.01■■□□□ 1.75
LIME1-203ENST00000465591 COL11A1P12107 1806 aaPredicted RBP26■■□□□ 1.75
LIME1-203ENST00000465591 MORN1Q5T089 497 aa26■■□□□ 1.75
LIME1-203ENST00000465591 VPS53Q5VIR6 699 aa26■■□□□ 1.75
LIME1-203ENST00000465591 PLEKHH3Q7Z736 793 aa26■■□□□ 1.75
LIME1-203ENST00000465591 FAM227BQ96M60 508 aa26■■□□□ 1.75
LIME1-203ENST00000465591 NUDT12Q9BQG2 462 aa26■■□□□ 1.75
LIME1-203ENST00000465591 SH2D4AQ9H788 454 aa26■■□□□ 1.75
LIME1-203ENST00000465591 IGKV6D-41A0A0C4DH26 115 aa25.99■■□□□ 1.75
LIME1-203ENST00000465591 A0A0D9SFI3 127 aa25.99■■□□□ 1.75
LIME1-203ENST00000465591 HMGCRP04035 888 aa25.99■■□□□ 1.75
LIME1-203ENST00000465591 U2AF1L4Q8WU68 220 aaKnown RBP25.99■■□□□ 1.75
LIME1-203ENST00000465591 SOCS4Q8WXH5 440 aa25.99■■□□□ 1.75
LIME1-203ENST00000465591 NACAP1Q9BZK3 213 aa25.99■■□□□ 1.75
LIME1-203ENST00000465591 NAPBQ9H115 298 aa25.99■■□□□ 1.75
LIME1-203ENST00000465591 WDR46O15213 610 aaKnown RBP25.98■■□□□ 1.75
LIME1-203ENST00000465591 DSG3P32926 999 aa25.98■■□□□ 1.75
LIME1-203ENST00000465591 PPARAQ07869 468 aa25.98■■□□□ 1.75
LIME1-203ENST00000465591 CCAR1Q8IX12 1150 aaKnown RBP25.98■■□□□ 1.75
LIME1-203ENST00000465591 ATG4CQ96DT6 458 aa25.98■■□□□ 1.75
LIME1-203ENST00000465591 PAK6Q9NQU5 681 aaPredicted RBP25.98■■□□□ 1.75
LIME1-203ENST00000465591 HOXC10Q9NYD6 342 aa25.98■■□□□ 1.75
LIME1-203ENST00000465591 FLOT1O75955 427 aa25.97■■□□□ 1.75
LIME1-203ENST00000465591 CCNA1P78396 465 aa25.97■■□□□ 1.75
LIME1-203ENST00000465591 CCL14Q16627 93 aa25.97■■□□□ 1.75
LIME1-203ENST00000465591 PRPF38BQ5VTL8 546 aaKnown RBP25.97■■□□□ 1.75
LIME1-203ENST00000465591 FBXO28Q9NVF7 368 aa25.97■■□□□ 1.75
LIME1-203ENST00000465591 TACC3Q9Y6A5 838 aa25.97■■□□□ 1.75
LIME1-203ENST00000465591 SGPL1O95470 568 aa25.96■■□□□ 1.75
LIME1-203ENST00000465591 XRCC5P13010 732 aaKnown RBP25.96■■□□□ 1.75
LIME1-203ENST00000465591 WDR78Q5VTH9 848 aa25.96■■□□□ 1.75
LIME1-203ENST00000465591 UBE2Q1Q7Z7E8 422 aa25.96■■□□□ 1.75
LIME1-203ENST00000465591 NKX2-3Q8TAU0 364 aa25.96■■□□□ 1.75
LIME1-203ENST00000465591 DEFB118Q96PH6 123 aa25.96■■□□□ 1.75
LIME1-203ENST00000465591 MOV10L1Q9BXT6 1211 aaKnown RBP25.96■■□□□ 1.75
LIME1-203ENST00000465591 OSBPL3Q9H4L5 887 aa25.96■■□□□ 1.75
LIME1-203ENST00000465591 HELLSQ9NRZ9 838 aa25.96■■□□□ 1.75
LIME1-203ENST00000465591 NYAP2Q9P242 653 aa25.96■■□□□ 1.75
LIME1-203ENST00000465591 CEP290O15078 2479 aa25.96■■□□□ 1.75
LIME1-203ENST00000465591 TRIM6-TRIM34B2RNG4 842 aa25.95■■□□□ 1.74
LIME1-203ENST00000465591 NMIQ13287 307 aaPredicted RBP25.95■■□□□ 1.74
LIME1-203ENST00000465591 FAM83BQ5T0W9 1011 aa25.95■■□□□ 1.74
LIME1-203ENST00000465591 SAMD1Q6SPF0 538 aaPredicted RBP25.95■■□□□ 1.74
LIME1-203ENST00000465591 ZNF444Q8N0Y2 327 aaPredicted RBP25.95■■□□□ 1.74
LIME1-203ENST00000465591 CEP95Q96GE4 821 aa25.95■■□□□ 1.74
LIME1-203ENST00000465591 NUP88Q99567 741 aaPredicted RBP25.95■■□□□ 1.74
LIME1-203ENST00000465591 SPATC1LQ9H0A9 340 aa25.95■■□□□ 1.74
LIME1-203ENST00000465591 XRN2Q9H0D6 950 aaKnown RBP eCLIP25.95■■□□□ 1.744e-7■■■■■ 54.9
LIME1-203ENST00000465591 INCENPQ9NQS7 918 aa25.95■■□□□ 1.74
LIME1-203ENST00000465591 RAD21O60216 631 aa25.94■■□□□ 1.74
LIME1-203ENST00000465591 PTPREP23469 700 aa25.94■■□□□ 1.74
LIME1-203ENST00000465591 RGS2P41220 211 aa25.94■■□□□ 1.74
LIME1-203ENST00000465591 CTDSPL2Q05D32 466 aa25.94■■□□□ 1.74
LIME1-203ENST00000465591 MAP2K5Q13163 448 aa25.94■■□□□ 1.74
LIME1-203ENST00000465591 FAM47AQ5JRC9 791 aa25.94■■□□□ 1.74
LIME1-203ENST00000465591 ZNF589Q86UQ0 364 aaPredicted RBP25.94■■□□□ 1.74
LIME1-203ENST00000465591 RILPL2Q969X0 211 aa25.94■■□□□ 1.74
LIME1-203ENST00000465591 CWC22Q9HCG8 908 aaKnown RBP25.94■■□□□ 1.74
LIME1-203ENST00000465591 GOPCQ9HD26 462 aa25.94■■□□□ 1.74
LIME1-203ENST00000465591 MCMDC2Q4G0Z9 681 aa25.93■■□□□ 1.74
LIME1-203ENST00000465591 MAP3K21Q5TCX8 1036 aa25.93■■□□□ 1.74
LIME1-203ENST00000465591 APBA2Q99767 749 aa25.93■■□□□ 1.74
LIME1-203ENST00000465591 CLIP2Q9UDT6 1046 aa25.93■■□□□ 1.74
LIME1-203ENST00000465591 DDX52Q9Y2R4 599 aaKnown RBP eCLIP25.93■■□□□ 1.74
LIME1-203ENST00000465591 PLIN4Q96Q06 1357 aa25.93■■□□□ 1.74
LIME1-203ENST00000465591 SLC15A5A6NIM6 579 aa25.92■■□□□ 1.74
Retrieved 100 of 20,778 RNA–protein pairs in 50.4 ms