RNA–Protein interactions for RNA: ENST00000421223.5

DDX56-203, Transcript of DEAD-box helicase 56, humanhuman

TSL 2

Gene DDX56, Length 3,028 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56-203ENST00000421223 C4BP0C0L5 1744 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 DYNC1I1O14576 645 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 DDAH1O94760 285 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 MYL5Q02045 173 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 NCAPHQ15003 741 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 PPP2R5BQ15173 497 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 MTA3Q9BTC8 594 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 SRPRBQ9Y5M8 271 aaKnown RBP12.5□□□□□ -0.41
DDX56-203ENST00000421223 MYH13Q9UKX3 1938 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 MYH15Q9Y2K3 1946 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 BMP6P22004 513 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 SCNN1DP51172 638 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 DDR1Q08345 913 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 BLZF1Q9H2G9 400 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 MAN1B1Q9UKM7 699 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 CNTNAP5Q8WYK1 1306 aa12.5□□□□□ -0.41
DDX56-203ENST00000421223 RIOK3O14730 519 aaKnown RBP12.49□□□□□ -0.41
DDX56-203ENST00000421223 TUBE1Q9UJT0 475 aa12.49□□□□□ -0.41
DDX56-203ENST00000421223 A0A087X0B3 334 aa12.49□□□□□ -0.41
DDX56-203ENST00000421223 SFPQP23246 707 aaKnown RBP eCLIP12.49□□□□□ -0.41
DDX56-203ENST00000421223 KRT27Q7Z3Y8 459 aa12.49□□□□□ -0.41
DDX56-203ENST00000421223 TBC1D16Q8TBP0 767 aa12.49□□□□□ -0.41
DDX56-203ENST00000421223 TMEM232C9JQI7 657 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 PCP11498 1178 aaKnown RBP12.48□□□□□ -0.41
DDX56-203ENST00000421223 SBK1Q52WX2 424 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 USP17L2Q6R6M4 530 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 CLEC10AQ8IUN9 316 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 EYA3Q99504 573 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 UBA5Q9GZZ9 404 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 NFE2L3Q9Y4A8 694 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 CCDC194A0A1B0GVG4 234 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 SLURP2P0DP57 97 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 ATP2B4P23634 1241 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 ZNF622Q969S3 477 aaKnown RBP eCLIP12.48□□□□□ -0.418e-7■■■□□ 14.9
DDX56-203ENST00000421223 TMEM47Q9BQJ4 181 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 MAPK8IP1Q9UQF2 711 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 BTAF1O14981 1849 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 CACNA1SQ13698 1873 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 FGRP09769 529 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 CDC25BP30305 580 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 RCAN1P53805 252 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 FMR1Q06787 632 aaKnown RBP eCLIP12.48□□□□□ -0.41
DDX56-203ENST00000421223 TXNRD1Q16881 649 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 MYRIPQ8NFW9 859 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 ZC3H12CQ9C0D7 883 aaKnown RBP12.48□□□□□ -0.41
DDX56-203ENST00000421223 CHD4Q14839 1912 aa12.48□□□□□ -0.41
DDX56-203ENST00000421223 ARAP2Q8WZ64 1704 aa12.47□□□□□ -0.41
DDX56-203ENST00000421223 DOCK2Q92608 1830 aa12.47□□□□□ -0.41
DDX56-203ENST00000421223 CDK8P49336 464 aa12.47□□□□□ -0.41
DDX56-203ENST00000421223 KLRF2D3W0D1 207 aa12.47□□□□□ -0.41
DDX56-203ENST00000421223 PFKFB3Q16875 520 aaPredicted RBP12.47□□□□□ -0.41
DDX56-203ENST00000421223 INF2Q27J81 1249 aa12.47□□□□□ -0.41
DDX56-203ENST00000421223 TYW1BQ6NUM6 668 aa12.47□□□□□ -0.41
DDX56-203ENST00000421223 BLIDQ8IZY5 108 aa12.47□□□□□ -0.41
DDX56-203ENST00000421223 FAM177A1Q8N128 213 aaPredicted RBP12.47□□□□□ -0.41
DDX56-203ENST00000421223 RTFDC1Q9BY42 306 aaPredicted RBP12.47□□□□□ -0.41
DDX56-203ENST00000421223 SAMSN1Q9NSI8 373 aaKnown RBP12.47□□□□□ -0.41
DDX56-203ENST00000421223 COL5A3P25940 1745 aaPredicted RBP12.46□□□□□ -0.41
DDX56-203ENST00000421223 FRMPD2Q68DX3 1309 aaPredicted RBP12.46□□□□□ -0.41
DDX56-203ENST00000421223 BBOX1O75936 387 aa12.46□□□□□ -0.41
DDX56-203ENST00000421223 RASA1P20936 1047 aa12.46□□□□□ -0.41
DDX56-203ENST00000421223 DHX8Q14562 1220 aaKnown RBP12.46□□□□□ -0.41
DDX56-203ENST00000421223 PTPN14Q15678 1187 aa12.46□□□□□ -0.41
DDX56-203ENST00000421223 NPY5RQ15761 445 aa12.46□□□□□ -0.41
DDX56-203ENST00000421223 CCDC34Q96HJ3 373 aa12.46□□□□□ -0.41
DDX56-203ENST00000421223 PRIMPOLQ96LW4 560 aa12.46□□□□□ -0.41
DDX56-203ENST00000421223 MPHOSPH10O00566 681 aaKnown RBP12.46□□□□□ -0.41
DDX56-203ENST00000421223 TOP1P11387 765 aaKnown RBP12.46□□□□□ -0.41
DDX56-203ENST00000421223 ARMCX5Q6P1M9 558 aa12.46□□□□□ -0.41
DDX56-203ENST00000421223 CPLX3Q8WVH0 158 aa12.46□□□□□ -0.41
DDX56-203ENST00000421223 BBXQ8WY36 941 aaPredicted RBP12.46□□□□□ -0.41
DDX56-203ENST00000421223 FAM205AQ6ZU69 1335 aa12.46□□□□□ -0.42
DDX56-203ENST00000421223 PP2D1A8MPX8 630 aa12.46□□□□□ -0.42
DDX56-203ENST00000421223 PPEF1O14829 653 aaPredicted RBP12.46□□□□□ -0.42
DDX56-203ENST00000421223 ACTN4O43707 911 aaKnown RBP12.46□□□□□ -0.42
DDX56-203ENST00000421223 APBA3O96018 575 aa12.46□□□□□ -0.42
DDX56-203ENST00000421223 ADRA2BP18089 450 aa12.46□□□□□ -0.42
DDX56-203ENST00000421223 RBM5P52756 815 aaKnown RBP eCLIP12.46□□□□□ -0.42
DDX56-203ENST00000421223 CCZ1BP86790 482 aa12.46□□□□□ -0.42
DDX56-203ENST00000421223 CCZ1P86791 482 aaPredicted RBP12.46□□□□□ -0.42
DDX56-203ENST00000421223 MDM2Q00987 491 aaPredicted RBP12.46□□□□□ -0.42
DDX56-203ENST00000421223 DGKHQ86XP1 1220 aa12.46□□□□□ -0.42
DDX56-203ENST00000421223 LRRC47Q8N1G4 583 aaKnown RBP12.46□□□□□ -0.42
DDX56-203ENST00000421223 UIMC1Q96RL1 719 aa12.46□□□□□ -0.42
DDX56-203ENST00000421223 MAP7D2Q96T17 732 aa12.46□□□□□ -0.42
DDX56-203ENST00000421223 BPIFA3Q9BQP9 254 aa12.46□□□□□ -0.42
DDX56-203ENST00000421223 TTF2Q9UNY4 1162 aaKnown RBP12.46□□□□□ -0.42
DDX56-203ENST00000421223 IKBKBO14920 756 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 CYTH3O43739 400 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 NRDCO43847 1150 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 CACNB3P54284 484 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 NAPAP54920 295 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 GSDMDP57764 484 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 CEP135Q66GS9 1140 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 PROM2Q8N271 834 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 CERKQ8TCT0 537 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 CEP95Q96GE4 821 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 PAGE5Q96GU1 130 aa12.45□□□□□ -0.42
DDX56-203ENST00000421223 TMX4Q9H1E5 349 aaPredicted RBP12.45□□□□□ -0.42
DDX56-203ENST00000421223 HSD3B7Q9H2F3 369 aa12.45□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 9.2 ms