RNA–Protein interactions for RNA: ENST00000411423.1

SF3A1-202, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 4

Gene SF3A1, Length 548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-202ENST00000411423 GPRC5AQ8NFJ5 357 aa22.8■■□□□ 1.24
SF3A1-202ENST00000411423 BTBD7Q9P203 1132 aa22.8■■□□□ 1.24
SF3A1-202ENST00000411423 TACC3Q9Y6A5 838 aa22.8■■□□□ 1.24
SF3A1-202ENST00000411423 SPICE1Q8N0Z3 855 aa22.79■■□□□ 1.24
SF3A1-202ENST00000411423 COA7Q96BR5 231 aa22.79■■□□□ 1.24
SF3A1-202ENST00000411423 OSBPL3Q9H4L5 887 aa22.79■■□□□ 1.24
SF3A1-202ENST00000411423 LBX2Q6XYB7 198 aa22.78■■□□□ 1.24
SF3A1-202ENST00000411423 SLAIN1Q8ND83 568 aa22.78■■□□□ 1.24
SF3A1-202ENST00000411423 SHISA4Q96DD7 197 aa22.78■■□□□ 1.24
SF3A1-202ENST00000411423 TMEM106CQ9BVX2 250 aa22.78■■□□□ 1.24
SF3A1-202ENST00000411423 VCPKMTQ9H867 229 aa22.78■■□□□ 1.24
SF3A1-202ENST00000411423 KIAA0100Q14667 2235 aaKnown RBP22.78■■□□□ 1.24
SF3A1-202ENST00000411423 A0A0G2JMZ2 1700 aa22.77■■□□□ 1.24
SF3A1-202ENST00000411423 IGKV6D-41A0A0C4DH26 115 aa22.77■■□□□ 1.24
SF3A1-202ENST00000411423 PDE4AP27815 886 aa22.77■■□□□ 1.24
SF3A1-202ENST00000411423 ZNF589Q86UQ0 364 aaPredicted RBP22.77■■□□□ 1.24
SF3A1-202ENST00000411423 ARHGEF10LQ9HCE6 1279 aa22.77■■□□□ 1.24
SF3A1-202ENST00000411423 INCENPQ9NQS7 918 aa22.77■■□□□ 1.24
SF3A1-202ENST00000411423 RABGAP1Q9Y3P9 1069 aa22.77■■□□□ 1.24
SF3A1-202ENST00000411423 PARP14Q460N5 1801 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 INHAP05111 366 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 CCL5P13501 91 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 ATP2B2Q01814 1243 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 TRIM32Q13049 653 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 NMIQ13287 307 aaPredicted RBP22.76■■□□□ 1.23
SF3A1-202ENST00000411423 PXYLP1Q8TE99 480 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 GTF3C2Q8WUA4 911 aaPredicted RBP22.76■■□□□ 1.23
SF3A1-202ENST00000411423 RILPL2Q969X0 211 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 NAPBQ9H115 298 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 UNC93B1Q9H1C4 597 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 KANSL2Q9H9L4 492 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 MKNK2Q9HBH9 465 aa22.76■■□□□ 1.23
SF3A1-202ENST00000411423 TRIM6-TRIM34B2RNG4 842 aa22.75■■□□□ 1.23
SF3A1-202ENST00000411423 PPARAQ07869 468 aa22.75■■□□□ 1.23
SF3A1-202ENST00000411423 GPR142Q7Z601 462 aa22.75■■□□□ 1.23
SF3A1-202ENST00000411423 USP6NLQ92738 828 aa22.75■■□□□ 1.23
SF3A1-202ENST00000411423 TANGO6Q9C0B7 1094 aa22.75■■□□□ 1.23
SF3A1-202ENST00000411423 HELLSQ9NRZ9 838 aa22.75■■□□□ 1.23
SF3A1-202ENST00000411423 BIN2Q9UBW5 565 aaPredicted RBP22.75■■□□□ 1.23
SF3A1-202ENST00000411423 CTDSPL2Q05D32 466 aa22.74■■□□□ 1.23
SF3A1-202ENST00000411423 LPAR1Q92633 364 aa22.74■■□□□ 1.23
SF3A1-202ENST00000411423 NACAP1Q9BZK3 213 aa22.74■■□□□ 1.23
SF3A1-202ENST00000411423 CYP2B6P20813 491 aa22.73■■□□□ 1.23
SF3A1-202ENST00000411423 MAPK4P31152 587 aa22.73■■□□□ 1.23
SF3A1-202ENST00000411423 DSG3P32926 999 aa22.73■■□□□ 1.23
SF3A1-202ENST00000411423 COG2Q14746 738 aa22.73■■□□□ 1.23
SF3A1-202ENST00000411423 MORN1Q5T089 497 aa22.73■■□□□ 1.23
SF3A1-202ENST00000411423 TRIB2Q92519 343 aa22.73■■□□□ 1.23
SF3A1-202ENST00000411423 ATG4CQ96DT6 458 aa22.73■■□□□ 1.23
SF3A1-202ENST00000411423 FBXO28Q9NVF7 368 aa22.73■■□□□ 1.23
SF3A1-202ENST00000411423 WDR46O15213 610 aaKnown RBP22.72■■□□□ 1.23
SF3A1-202ENST00000411423 SDSP20132 328 aa22.72■■□□□ 1.23
SF3A1-202ENST00000411423 UBXN2AP68543 259 aa22.72■■□□□ 1.23
SF3A1-202ENST00000411423 MCMDC2Q4G0Z9 681 aa22.72■■□□□ 1.23
SF3A1-202ENST00000411423 FAM47AQ5JRC9 791 aa22.72■■□□□ 1.23
SF3A1-202ENST00000411423 PLEKHH3Q7Z736 793 aa22.72■■□□□ 1.23
SF3A1-202ENST00000411423 NUP88Q99567 741 aaPredicted RBP22.72■■□□□ 1.23
SF3A1-202ENST00000411423 RNF208Q9H0X6 261 aa22.72■■□□□ 1.23
SF3A1-202ENST00000411423 SH2D4AQ9H788 454 aa22.72■■□□□ 1.23
SF3A1-202ENST00000411423 NYAP2Q9P242 653 aa22.72■■□□□ 1.23
SF3A1-202ENST00000411423 DDX52Q9Y2R4 599 aaKnown RBP eCLIP22.72■■□□□ 1.23
SF3A1-202ENST00000411423 CEP95Q96GE4 821 aa22.71■■□□□ 1.23
SF3A1-202ENST00000411423 PLIN4Q96Q06 1357 aa22.71■■□□□ 1.23
SF3A1-202ENST00000411423 FLOT1O75955 427 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 GJB1P08034 283 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 HSPD1P10809 573 aaKnown RBP22.7■■□□□ 1.22
SF3A1-202ENST00000411423 GJA8P48165 433 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 ALX1Q15699 326 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 CCL14Q16627 93 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 FAM83BQ5T0W9 1011 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 ZNF444Q8N0Y2 327 aaPredicted RBP22.7■■□□□ 1.22
SF3A1-202ENST00000411423 NEDD1Q8NHV4 660 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 NUDT12Q9BQG2 462 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 MOV10L1Q9BXT6 1211 aaKnown RBP22.7■■□□□ 1.22
SF3A1-202ENST00000411423 MTMR4Q9NYA4 1195 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 HOXC10Q9NYD6 342 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 CLIP2Q9UDT6 1046 aa22.7■■□□□ 1.22
SF3A1-202ENST00000411423 FGAP02671 866 aa22.69■■□□□ 1.22
SF3A1-202ENST00000411423 SAMD1Q6SPF0 538 aaPredicted RBP22.69■■□□□ 1.22
SF3A1-202ENST00000411423 NKX2-3Q8TAU0 364 aa22.69■■□□□ 1.22
SF3A1-202ENST00000411423 SOCS4Q8WXH5 440 aa22.69■■□□□ 1.22
SF3A1-202ENST00000411423 ANAPC4Q9UJX5 808 aa22.69■■□□□ 1.22
SF3A1-202ENST00000411423 ADAMTS5Q9UNA0 930 aa22.69■■□□□ 1.22
SF3A1-202ENST00000411423 MYH4Q9Y623 1939 aa22.69■■□□□ 1.22
SF3A1-202ENST00000411423 CCDC171Q6TFL3 1326 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 F5H6K3 240 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 RAD21O60216 631 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 NDUFB10O96000 172 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 HMGCRP04035 888 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 GSPT1P15170 499 aaKnown RBP22.68■■□□□ 1.22
SF3A1-202ENST00000411423 PTPREP23469 700 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 TFAP4Q01664 338 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 KLRC3Q07444 240 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 TICAM2Q86XR7 235 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 SPATC1LQ9H0A9 340 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 IL25Q9H293 177 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 GOPCQ9HD26 462 aa22.68■■□□□ 1.22
SF3A1-202ENST00000411423 PAK6Q9NQU5 681 aaPredicted RBP22.68■■□□□ 1.22
SF3A1-202ENST00000411423 COL11A1P12107 1806 aaPredicted RBP22.68■■□□□ 1.22
SF3A1-202ENST00000411423 XRCC5P13010 732 aaKnown RBP22.67■■□□□ 1.22
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms