RNA–Protein interactions for RNA: ENST00000394269.7

TCOF1-203, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TCOF1, Length 3,400 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-203ENST00000394269 SLF2Q8IX21 1173 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 LRRC47Q8N1G4 583 aaKnown RBP12.74□□□□□ -0.37
TCOF1-203ENST00000394269 CERS5Q8N5B7 392 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 PLIN2Q99541 437 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 PHF20Q9BVI0 1012 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 MKRN1Q9UHC7 482 aaKnown RBP12.74□□□□□ -0.37
TCOF1-203ENST00000394269 CEP131Q9UPN4 1083 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 MYH13Q9UKX3 1938 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 GPR75-ASB3A0A0A6YYF3 556 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 KLRF2D3W0D1 207 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 FGRP09769 529 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 NPR1P16066 1061 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 ALDH1B1P30837 517 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 PDE6BP35913 854 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 KLHL10Q6JEL2 608 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 TBC1D22AQ8WUA7 517 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 CEP95Q96GE4 821 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 PDS5AQ29RF7 1337 aaKnown RBP12.74□□□□□ -0.37
TCOF1-203ENST00000394269 TTC38Q5R3I4 469 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 KRBA2Q6ZNG9 492 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 FOXP4Q8IVH2 680 aaPredicted RBP12.74□□□□□ -0.37
TCOF1-203ENST00000394269 KCNF1Q9H3M0 494 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 ZNF287Q9HBT7 754 aa12.74□□□□□ -0.37
TCOF1-203ENST00000394269 CNTNAP5Q8WYK1 1306 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 PPP4CP60510 307 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 CCDC144BQ3MJ40 725 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 METTL16Q86W50 562 aaKnown RBP12.73□□□□□ -0.37
TCOF1-203ENST00000394269 DGKHQ86XP1 1220 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.73□□□□□ -0.37
TCOF1-203ENST00000394269 IFNKQ9P0W0 207 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 FBXO2Q9UK22 296 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-203ENST00000394269 H0YIN7 160 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 PLCG2P16885 1265 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 PTPREP23469 700 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.73□□□□□ -0.37
TCOF1-203ENST00000394269 ILDR2Q71H61 639 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 GPCPD1Q9NPB8 672 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 CACNA1SQ13698 1873 aa12.73□□□□□ -0.37
TCOF1-203ENST00000394269 CCDC194A0A1B0GVG4 234 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 COBLO75128 1261 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 PRR29P0C7W0 189 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 ATP1A3P13637 1013 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 RHBDL3P58872 404 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 NLRP12P59046 1061 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 R3HDM1Q15032 1099 aaKnown RBP12.72□□□□□ -0.37
TCOF1-203ENST00000394269 UIMC1Q96RL1 719 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 COA1Q9GZY4 146 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 RGS17Q9UGC6 210 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-203ENST00000394269 RREB1Q92766 1687 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 ZNF500O60304 480 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-203ENST00000394269 OFD1O75665 1012 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 CAVIN2O95810 425 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 SERPINC1P01008 464 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 TRMT44Q8IYL2 757 aaKnown RBP12.72□□□□□ -0.37
TCOF1-203ENST00000394269 TNRC6CQ9HCJ0 1690 aaKnown RBP12.72□□□□□ -0.37
TCOF1-203ENST00000394269 DDX4Q9NQI0 724 aaKnown RBP12.72□□□□□ -0.37
TCOF1-203ENST00000394269 PODXL2Q9NZ53 605 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 BCORQ6W2J9 1755 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 RCAN1P53805 252 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 TPM4P67936 248 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 NFIAQ12857 509 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 PFKFB3Q16875 520 aaPredicted RBP12.72□□□□□ -0.37
TCOF1-203ENST00000394269 TYW1BQ6NUM6 668 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 SYMPKQ92797 1274 aaKnown RBP12.72□□□□□ -0.37
TCOF1-203ENST00000394269 MASTLQ96GX5 879 aa12.72□□□□□ -0.37
TCOF1-203ENST00000394269 USP17L5A8MUK1 530 aa12.71□□□□□ -0.37
TCOF1-203ENST00000394269 PARP1P09874 1014 aaKnown RBP12.71□□□□□ -0.37
TCOF1-203ENST00000394269 CDK11BP21127 795 aaKnown RBP12.71□□□□□ -0.37
TCOF1-203ENST00000394269 NAPAP54920 295 aa12.71□□□□□ -0.37
TCOF1-203ENST00000394269 INF2Q27J81 1249 aa12.71□□□□□ -0.37
TCOF1-203ENST00000394269 SAMD1Q6SPF0 538 aaPredicted RBP12.71□□□□□ -0.37
TCOF1-203ENST00000394269 MAD2L2Q9UI95 211 aa12.71□□□□□ -0.37
TCOF1-203ENST00000394269 HPSEQ9Y251 543 aa12.71□□□□□ -0.37
TCOF1-203ENST00000394269 CYTH3O43739 400 aa12.71□□□□□ -0.37
TCOF1-203ENST00000394269 STX17P56962 302 aa12.71□□□□□ -0.37
TCOF1-203ENST00000394269 POSTNQ15063 836 aa12.71□□□□□ -0.37
TCOF1-203ENST00000394269 HOOK1Q9UJC3 728 aaKnown RBP12.71□□□□□ -0.37
TCOF1-203ENST00000394269 SRPRBQ9Y5M8 271 aaKnown RBP12.71□□□□□ -0.37
TCOF1-203ENST00000394269 THSD7AQ9UPZ6 1657 aa12.71□□□□□ -0.37
TCOF1-203ENST00000394269 AKR1B1P15121 316 aa12.71□□□□□ -0.38
TCOF1-203ENST00000394269 PLA2G4DQ86XP0 818 aa12.71□□□□□ -0.38
TCOF1-203ENST00000394269 BLIDQ8IZY5 108 aa12.71□□□□□ -0.38
TCOF1-203ENST00000394269 CACTINQ8WUQ7 758 aaKnown RBP12.71□□□□□ -0.38
TCOF1-203ENST00000394269 SMARCE1Q969G3 411 aa12.71□□□□□ -0.38
TCOF1-203ENST00000394269 AKT1S1Q96B36 256 aa12.71□□□□□ -0.38
TCOF1-203ENST00000394269 XPO4Q9C0E2 1151 aaKnown RBP12.71□□□□□ -0.38
TCOF1-203ENST00000394269 BLZF1Q9H2G9 400 aa12.71□□□□□ -0.38
TCOF1-203ENST00000394269 NHSQ6T4R5 1651 aa12.7□□□□□ -0.38
TCOF1-203ENST00000394269 CFAP100Q494V2 611 aa12.7□□□□□ -0.38
TCOF1-203ENST00000394269 TMC6Q7Z403 805 aa12.7□□□□□ -0.38
TCOF1-203ENST00000394269 ZFPM1Q8IX07 1006 aa12.7□□□□□ -0.38
TCOF1-203ENST00000394269 SMYD4Q8IYR2 804 aaPredicted RBP12.7□□□□□ -0.38
TCOF1-203ENST00000394269 TRMT1Q9NXH9 659 aaKnown RBP12.7□□□□□ -0.38
TCOF1-203ENST00000394269 PLSCR1O15162 318 aa12.7□□□□□ -0.38
TCOF1-203ENST00000394269 AOC3Q16853 763 aa12.7□□□□□ -0.38
TCOF1-203ENST00000394269 WWC2Q6AWC2 1192 aa12.7□□□□□ -0.38
TCOF1-203ENST00000394269 ZNF592Q92610 1267 aa12.7□□□□□ -0.38
TCOF1-203ENST00000394269 TEKT1Q969V4 418 aa12.7□□□□□ -0.38
TCOF1-203ENST00000394269 SEC63Q9UGP8 760 aaKnown RBP12.7□□□□□ -0.38
TCOF1-203ENST00000394269 SCN7AQ01118 1682 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms