RNA–Protein interactions for RNA: ENST00000354363.10

PRPF40A-201, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 2

Gene PRPF40A, Length 1,622 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-201ENST00000354363 CHGBP05060 677 aa17.45■□□□□ 0.38
PRPF40A-201ENST00000354363 TMEM179Q6ZVK1 233 aa17.45■□□□□ 0.38
PRPF40A-201ENST00000354363 C7orf61Q8IZ16 206 aa17.45■□□□□ 0.38
PRPF40A-201ENST00000354363 DDX24Q9GZR7 859 aaKnown RBP eCLIP17.45■□□□□ 0.383e-7■□□□□ 10.5
PRPF40A-201ENST00000354363 FLRT1Q9NZU1 646 aa17.45■□□□□ 0.38
PRPF40A-201ENST00000354363 STAP2Q9UGK3 403 aa17.45■□□□□ 0.38
PRPF40A-201ENST00000354363 ZNF236Q9UL36 1845 aa17.45■□□□□ 0.38
PRPF40A-201ENST00000354363 LHX8Q68G74 356 aa17.44■□□□□ 0.38
PRPF40A-201ENST00000354363 PFASO15067 1338 aa17.44■□□□□ 0.38
PRPF40A-201ENST00000354363 A0A1W2PPC1 479 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 SMIM22K7EJ46 135 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 AKR1B1P15121 316 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 GRB14Q14449 540 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 COG2Q14746 738 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 UBE3CQ15386 1083 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 KIAA1755Q5JYT7 1200 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 CLEC10AQ8IUN9 316 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 LRRCC1Q9C099 1032 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 ZMYND8Q9ULU4 1186 aaPredicted RBP17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 IVNS1ABPQ9Y6Y0 642 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 CYP2D7A0A087X1C5 515 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 SMARCA5O60264 1052 aaPredicted RBP17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 HOXC6P09630 235 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 C12orf60Q5U649 245 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 MFSD14CQ5VZR4 134 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 SIAH1Q8IUQ4 282 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 NPLOC4Q8TAT6 608 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 TANGO6Q9C0B7 1094 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 HOXC10Q9NYD6 342 aa17.43■□□□□ 0.38
PRPF40A-201ENST00000354363 COL6A1P12109 1028 aa17.42■□□□□ 0.38
PRPF40A-201ENST00000354363 CDK8P49336 464 aa17.42■□□□□ 0.38
PRPF40A-201ENST00000354363 GDF15Q99988 308 aa17.42■□□□□ 0.38
PRPF40A-201ENST00000354363 MOV10L1Q9BXT6 1211 aaKnown RBP17.42■□□□□ 0.38
PRPF40A-201ENST00000354363 GREB1LQ9C091 1923 aaPredicted RBP17.41■□□□□ 0.38
PRPF40A-201ENST00000354363 USP17L12C9JPN9 530 aa17.41■□□□□ 0.38
PRPF40A-201ENST00000354363 USP17L21D6R901 530 aa17.41■□□□□ 0.38
PRPF40A-201ENST00000354363 ICA1Q05084 483 aa17.41■□□□□ 0.38
PRPF40A-201ENST00000354363 C16orf86Q6ZW13 317 aa17.41■□□□□ 0.38
PRPF40A-201ENST00000354363 LPAR1Q92633 364 aa17.41■□□□□ 0.38
PRPF40A-201ENST00000354363 CCDC17Q96LX7 622 aa17.41■□□□□ 0.38
PRPF40A-201ENST00000354363 ARHGEF10LQ9HCE6 1279 aa17.41■□□□□ 0.38
PRPF40A-201ENST00000354363 TMX2Q9Y320 296 aa17.41■□□□□ 0.38
PRPF40A-201ENST00000354363 SLC4A4Q9Y6R1 1079 aa17.41■□□□□ 0.38
PRPF40A-201ENST00000354363 SMCHD1A6NHR9 2005 aa17.4■□□□□ 0.38
PRPF40A-201ENST00000354363 DSG3P32926 999 aa17.4■□□□□ 0.38
PRPF40A-201ENST00000354363 ATP2B2Q01814 1243 aa17.4■□□□□ 0.38
PRPF40A-201ENST00000354363 ZSCAN25Q6NSZ9 544 aa17.4■□□□□ 0.38
PRPF40A-201ENST00000354363 AMOTL1Q8IY63 956 aa17.4■□□□□ 0.38
PRPF40A-201ENST00000354363 SPATC1LQ9H0A9 340 aa17.4■□□□□ 0.38
PRPF40A-201ENST00000354363 PUS7LQ9H0K6 701 aaKnown RBP17.4■□□□□ 0.38
PRPF40A-201ENST00000354363 VCPKMTQ9H867 229 aa17.4■□□□□ 0.38
PRPF40A-201ENST00000354363 PLXNA1Q9UIW2 1896 aa17.4■□□□□ 0.38
PRPF40A-201ENST00000354363 SOX1O00570 391 aaPredicted RBP17.39■□□□□ 0.38
PRPF40A-201ENST00000354363 IGHA2P01877 340 aa17.39■□□□□ 0.38
PRPF40A-201ENST00000354363 SYN1P17600 705 aa17.39■□□□□ 0.38
PRPF40A-201ENST00000354363 BMP8BP34820 402 aa17.39■□□□□ 0.38
PRPF40A-201ENST00000354363 SPICE1Q8N0Z3 855 aa17.39■□□□□ 0.38
PRPF40A-201ENST00000354363 MB21D1Q8N884 522 aa17.39■□□□□ 0.38
PRPF40A-201ENST00000354363 SHCBP1Q8NEM2 672 aa17.39■□□□□ 0.38
PRPF40A-201ENST00000354363 DDRGK1Q96HY6 314 aa17.39■□□□□ 0.38
PRPF40A-201ENST00000354363 SH2D4AQ9H788 454 aa17.39■□□□□ 0.38
PRPF40A-201ENST00000354363 MYH4Q9Y623 1939 aa17.39■□□□□ 0.38
PRPF40A-201ENST00000354363 LAMA3Q16787 3333 aa17.39■□□□□ 0.37
PRPF40A-201ENST00000354363 STRNO43815 780 aa17.39■□□□□ 0.37
PRPF40A-201ENST00000354363 FLOT1O75955 427 aa17.39■□□□□ 0.37
PRPF40A-201ENST00000354363 ERCC3P19447 782 aa17.39■□□□□ 0.37
PRPF40A-201ENST00000354363 CYP2C19P33261 490 aa17.39■□□□□ 0.37
PRPF40A-201ENST00000354363 CTR9Q6PD62 1173 aa17.39■□□□□ 0.37
PRPF40A-201ENST00000354363 ADORA2AP29274 412 aa17.38■□□□□ 0.37
PRPF40A-201ENST00000354363 LRRC26Q2I0M4 334 aa17.38■□□□□ 0.37
PRPF40A-201ENST00000354363 DPP9Q86TI2 863 aa17.38■□□□□ 0.37
PRPF40A-201ENST00000354363 TRPV1Q8NER1 839 aa17.38■□□□□ 0.37
PRPF40A-201ENST00000354363 ATG4CQ96DT6 458 aa17.38■□□□□ 0.37
PRPF40A-201ENST00000354363 ECHDC1Q9NTX5 307 aa17.38■□□□□ 0.37
PRPF40A-201ENST00000354363 DDX20Q9UHI6 824 aaKnown RBP17.38■□□□□ 0.37
PRPF40A-201ENST00000354363 DNAH12Q6ZR08 3092 aa17.38■□□□□ 0.37
PRPF40A-201ENST00000354363 WDR46O15213 610 aaKnown RBP17.37■□□□□ 0.37
PRPF40A-201ENST00000354363 EEF2P13639 858 aaKnown RBP17.37■□□□□ 0.37
PRPF40A-201ENST00000354363 CNGA1P29973 690 aa17.37■□□□□ 0.37
PRPF40A-201ENST00000354363 MAGEA10P43363 369 aaPredicted RBP17.37■□□□□ 0.37
PRPF40A-201ENST00000354363 PLS1Q14651 629 aa17.37■□□□□ 0.37
PRPF40A-201ENST00000354363 DCTPP1Q9H773 170 aa17.37■□□□□ 0.37
PRPF40A-201ENST00000354363 MSCO60682 206 aa17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 COBLO75128 1261 aa17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 CYBAP13498 195 aa17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 OLFML2BQ68BL8 750 aa17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 LRCH3Q96II8 777 aa17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 STRBPQ96SI9 672 aaKnown RBP17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 MROH8Q9H579 483 aa17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 KANSL2Q9H9L4 492 aa17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 ARPP21Q9UBL0 812 aaPredicted RBP17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 SAMD1Q6SPF0 538 aaPredicted RBP17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 NCAPG2Q86XI2 1143 aa17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 KBTBD3Q8NAB2 608 aa17.36■□□□□ 0.37
PRPF40A-201ENST00000354363 ABRAQ8N0Z2 381 aa17.35■□□□□ 0.37
PRPF40A-201ENST00000354363 SENP6Q9GZR1 1112 aaPredicted RBP17.35■□□□□ 0.37
PRPF40A-201ENST00000354363 ADAMTS5Q9UNA0 930 aa17.35■□□□□ 0.37
PRPF40A-201ENST00000354363 GSG1L2A8MUP6 293 aa17.34■□□□□ 0.37
PRPF40A-201ENST00000354363 TMEM132BQ14DG7 1078 aa17.34■□□□□ 0.37
PRPF40A-201ENST00000354363 SBK1Q52WX2 424 aa17.34■□□□□ 0.37
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms