RNA–Protein interactions for RNA: ENST00000309428.9

RETREG3-201, Transcript of reticulophagy regulator family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RETREG3, Length 3,759 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RETREG3-201ENST00000309428 LIG3P49916 1009 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 POSTNQ15063 836 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 SUGCTQ9HAC7 445 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 CTNND2Q9UQB3 1225 aa14.29□□□□□ -0.12
RETREG3-201ENST00000309428 MED1Q15648 1581 aaPredicted RBP14.29□□□□□ -0.12
RETREG3-201ENST00000309428 EFCAB8A8MWE9 144 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 TSPY3P0CV98 308 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 TSPY8P0CW00 308 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 ENGASEQ8NFI3 743 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 SOWAHDA6NJG2 315 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 IDEP14735 1019 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 CMA1P23946 247 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 MTF1Q14872 753 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 WASF1Q92558 559 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 CNNM2Q9H8M5 875 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 POLD4Q9HCU8 107 aa14.28□□□□□ -0.12
RETREG3-201ENST00000309428 CCDC194A0A1B0GVG4 234 aa14.27□□□□□ -0.12
RETREG3-201ENST00000309428 IVLP07476 585 aa14.27□□□□□ -0.12
RETREG3-201ENST00000309428 PTGDRQ13258 359 aa14.27□□□□□ -0.12
RETREG3-201ENST00000309428 TOGARAM2Q6ZUX3 1019 aa14.27□□□□□ -0.12
RETREG3-201ENST00000309428 AMOTL1Q8IY63 956 aa14.27□□□□□ -0.12
RETREG3-201ENST00000309428 GPR161Q8N6U8 529 aaKnown RBP14.27□□□□□ -0.12
RETREG3-201ENST00000309428 ENAHQ8N8S7 591 aaPredicted RBP14.27□□□□□ -0.12
RETREG3-201ENST00000309428 SYMPKQ92797 1274 aaKnown RBP14.27□□□□□ -0.12
RETREG3-201ENST00000309428 POLR3EQ9NVU0 708 aa14.27□□□□□ -0.12
RETREG3-201ENST00000309428 TAB2Q9NYJ8 693 aa14.27□□□□□ -0.12
RETREG3-201ENST00000309428 MECOMQ03112 1051 aa14.27□□□□□ -0.13
RETREG3-201ENST00000309428 LETM2Q2VYF4 491 aa14.27□□□□□ -0.13
RETREG3-201ENST00000309428 SPECC1LQ69YQ0 1117 aa14.27□□□□□ -0.13
RETREG3-201ENST00000309428 NBPF11Q86T75 865 aa14.27□□□□□ -0.13
RETREG3-201ENST00000309428 METTL16Q86W50 562 aaKnown RBP14.27□□□□□ -0.13
RETREG3-201ENST00000309428 CCDC178Q5BJE1 867 aa14.27□□□□□ -0.13
RETREG3-201ENST00000309428 CEP112Q8N8E3 955 aa14.27□□□□□ -0.13
RETREG3-201ENST00000309428 PLCD4Q9BRC7 762 aa14.27□□□□□ -0.13
RETREG3-201ENST00000309428 PSDA5PKW4 1024 aaPredicted RBP14.26□□□□□ -0.13
RETREG3-201ENST00000309428 TRIM21P19474 475 aaKnown RBP14.26□□□□□ -0.13
RETREG3-201ENST00000309428 KRT2P35908 639 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 FMR1Q06787 632 aaKnown RBP eCLIP14.26□□□□□ -0.13
RETREG3-201ENST00000309428 INTS5Q6P9B9 1019 aaKnown RBP14.26□□□□□ -0.13
RETREG3-201ENST00000309428 FOXP4Q8IVH2 680 aaPredicted RBP14.26□□□□□ -0.13
RETREG3-201ENST00000309428 CRNKL1Q9BZJ0 848 aaKnown RBP14.26□□□□□ -0.13
RETREG3-201ENST00000309428 MINPP1Q9UNW1 487 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 WNT7AO00755 349 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 MYO1BO43795 1136 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 DEXIO95424 95 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 SYCP1Q15431 976 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 ATRIPQ8WXE1 791 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 ZSCAN10Q96SZ4 725 aaPredicted RBP14.26□□□□□ -0.13
RETREG3-201ENST00000309428 FRMPD2Q68DX3 1309 aaPredicted RBP14.26□□□□□ -0.13
RETREG3-201ENST00000309428 TXLNAP40222 546 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 SCNN1DP51172 638 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 CDR1P51861 262 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 HLTFQ14527 1009 aaKnown RBP eCLIP14.26□□□□□ -0.13
RETREG3-201ENST00000309428 INF2Q27J81 1249 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 MSL1Q68DK7 614 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 ACRBPQ8NEB7 543 aa14.26□□□□□ -0.13
RETREG3-201ENST00000309428 RPGRQ92834 1020 aaKnown RBP14.26□□□□□ -0.13
RETREG3-201ENST00000309428 FAM196BA6NMK8 535 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 TFRCP02786 760 aaKnown RBP14.25□□□□□ -0.13
RETREG3-201ENST00000309428 CDC25BP30305 580 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 UBXN1Q04323 297 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 CRACR2BQ8N4Y2 399 aaPredicted RBP14.25□□□□□ -0.13
RETREG3-201ENST00000309428 ZNF622Q969S3 477 aaKnown RBP eCLIP14.25□□□□□ -0.13
RETREG3-201ENST00000309428 GPCPD1Q9NPB8 672 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 RTCBQ9Y3I0 505 aaKnown RBP14.25□□□□□ -0.13
RETREG3-201ENST00000309428 KRT9P35527 623 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 TCP10Q12799 353 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 NFIXQ14938 502 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 MAP9Q49MG5 647 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 CCDC122Q5T0U0 273 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 SLC35F6Q8N357 371 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 STAG2Q8N3U4 1231 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 COL5A2P05997 1499 aaPredicted RBP14.25□□□□□ -0.13
RETREG3-201ENST00000309428 TEX33O43247 280 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 UFL1O94874 794 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 PLA2G4AP47712 749 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 TDRD12Q587J7 1177 aaKnown RBP14.25□□□□□ -0.13
RETREG3-201ENST00000309428 CC2D1AQ6P1N0 951 aaPredicted RBP14.25□□□□□ -0.13
RETREG3-201ENST00000309428 CEP57Q86XR8 500 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 KLHL34Q8N239 644 aa14.25□□□□□ -0.13
RETREG3-201ENST00000309428 CCDC47Q96A33 483 aaKnown RBP14.25□□□□□ -0.13
RETREG3-201ENST00000309428 FAM217BQ9NTX9 383 aaPredicted RBP14.25□□□□□ -0.13
RETREG3-201ENST00000309428 EBAG9O00559 213 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 MMP1P03956 469 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 CCDC96Q2M329 555 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 TTC38Q5R3I4 469 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 TPTE2Q6XPS3 522 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 LINC00116Q8NCU8 138 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 FAM84BQ96KN1 310 aaPredicted RBP14.24□□□□□ -0.13
RETREG3-201ENST00000309428 MAN1B1Q9UKM7 699 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 CAMTA2O94983 1202 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 UBA7P41226 1012 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 CACNB3P54284 484 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 GJA10Q969M2 543 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 TRIM47Q96LD4 638 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 FAM204AQ9H8W3 233 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 TFR2Q9UP52 801 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 LDHBP07195 334 aaKnown RBP14.24□□□□□ -0.13
RETREG3-201ENST00000309428 CYP2C19P33261 490 aa14.24□□□□□ -0.13
RETREG3-201ENST00000309428 ARID5AQ03989 594 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms