RNA–Protein interactions for RNA: ENST00000269137.11

SS18-201, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene SS18, Length 1,836 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-201ENST00000269137 CNPY2Q9Y2B0 182 aa16.35■□□□□ 0.21
SS18-201ENST00000269137 V9GY48 417 aaPredicted RBP16.35■□□□□ 0.21
SS18-201ENST00000269137 UBE2Q2LH0YL09 131 aa16.34■□□□□ 0.21
SS18-201ENST00000269137 SMARCA1P28370 1054 aa16.34■□□□□ 0.21
SS18-201ENST00000269137 PKN1Q16512 942 aa16.34■□□□□ 0.21
SS18-201ENST00000269137 RBM26Q5T8P6 1007 aaKnown RBP16.34■□□□□ 0.21
SS18-201ENST00000269137 MKL1Q969V6 931 aa16.34■□□□□ 0.21
SS18-201ENST00000269137 XPO5Q9HAV4 1204 aaKnown RBP eCLIP16.34■□□□□ 0.21
SS18-201ENST00000269137 GJB4Q9NTQ9 266 aa16.34■□□□□ 0.21
SS18-201ENST00000269137 GPRC5DQ9NZD1 345 aa16.34■□□□□ 0.21
SS18-201ENST00000269137 NYAP2Q9P242 653 aa16.34■□□□□ 0.21
SS18-201ENST00000269137 CLIP2Q9UDT6 1046 aa16.34■□□□□ 0.21
SS18-201ENST00000269137 BAZ2BQ9UIF8 2168 aaKnown RBP16.34■□□□□ 0.21
SS18-201ENST00000269137 PARP1P09874 1014 aaKnown RBP16.33■□□□□ 0.21
SS18-201ENST00000269137 SNHG28P0DPA3 235 aa16.33■□□□□ 0.21
SS18-201ENST00000269137 KIF23Q02241 960 aaPredicted RBP16.33■□□□□ 0.21
SS18-201ENST00000269137 ABCB5Q2M3G0 1257 aa16.33■□□□□ 0.21
SS18-201ENST00000269137 KIF4BQ2VIQ3 1234 aa16.33■□□□□ 0.21
SS18-201ENST00000269137 TBC1D10BQ4KMP7 808 aaPredicted RBP16.33■□□□□ 0.21
SS18-201ENST00000269137 FAM173BQ6P4H8 233 aa16.33■□□□□ 0.21
SS18-201ENST00000269137 BRAPQ7Z569 592 aa16.33■□□□□ 0.21
SS18-201ENST00000269137 USP48Q86UV5 1035 aa16.33■□□□□ 0.21
SS18-201ENST00000269137 STAG2Q8N3U4 1231 aa16.33■□□□□ 0.21
SS18-201ENST00000269137 UTRNP46939 3433 aa16.33■□□□□ 0.21
SS18-201ENST00000269137 NCLP19338 710 aaKnown RBP16.33■□□□□ 0.2
SS18-201ENST00000269137 RASA3Q14644 834 aa16.33■□□□□ 0.2
SS18-201ENST00000269137 SCAND2PQ9GZW5 306 aaPredicted RBP16.33■□□□□ 0.2
SS18-201ENST00000269137 SRCAPQ6ZRS2 3230 aa16.33■□□□□ 0.2
SS18-201ENST00000269137 MYH4Q9Y623 1939 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 PDHBP11177 359 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 XBP1P17861 261 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 KLHL40Q2TBA0 621 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 CLEC10AQ8IUN9 316 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 SPZ1Q9BXG8 430 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 GDPD2Q9HCC8 539 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 RNF181Q9P0P0 153 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 CFAP45Q9UL16 551 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 ELP1O95163 1332 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 MYH15Q9Y2K3 1946 aa16.32■□□□□ 0.2
SS18-201ENST00000269137 KLRF2D3W0D1 207 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 MMP1P03956 469 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 U2AF2P26368 475 aaKnown RBP eCLIP16.31■□□□□ 0.21e-7■■■□□ 16.4
SS18-201ENST00000269137 RRP1BQ14684 758 aaKnown RBP16.31■□□□□ 0.2
SS18-201ENST00000269137 SEPT2Q15019 361 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 ASPRV1Q53RT3 343 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 LRRC47Q8N1G4 583 aaKnown RBP16.31■□□□□ 0.2
SS18-201ENST00000269137 TEPSINQ96N21 525 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 ZNF396Q96N95 335 aaPredicted RBP16.31■□□□□ 0.2
SS18-201ENST00000269137 CABP5Q9NP86 173 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 SYNPO2Q9UMS6 1093 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 USP17L5A8MUK1 530 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 FIBPO43427 364 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 GDF11O95390 407 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 SCG2P13521 617 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 EEF2P13639 858 aaKnown RBP16.31■□□□□ 0.2
SS18-201ENST00000269137 SAFBQ15424 915 aaKnown RBP eCLIP16.31■□□□□ 0.2
SS18-201ENST00000269137 PFKFB3Q16875 520 aaPredicted RBP16.31■□□□□ 0.2
SS18-201ENST00000269137 SLC35G1Q2M3R5 365 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 USP17L2Q6R6M4 530 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 SIAH1Q8IUQ4 282 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 CDAN1Q8IWY9 1227 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 HACL1Q9UJ83 578 aa16.31■□□□□ 0.2
SS18-201ENST00000269137 DDX49Q9Y6V7 483 aaKnown RBP16.31■□□□□ 0.2
SS18-201ENST00000269137 KIF28PB7ZC32 967 aa16.3■□□□□ 0.2
SS18-201ENST00000269137 CYTH3O43739 400 aa16.3■□□□□ 0.2
SS18-201ENST00000269137 MBD3O95983 291 aa16.3■□□□□ 0.2
SS18-201ENST00000269137 GH2P01242 217 aa16.3■□□□□ 0.2
SS18-201ENST00000269137 ICA1Q05084 483 aa16.3■□□□□ 0.2
SS18-201ENST00000269137 SHROOM1Q2M3G4 852 aaPredicted RBP16.3■□□□□ 0.2
SS18-201ENST00000269137 C9orf131Q5VYM1 1079 aa16.3■□□□□ 0.2
SS18-201ENST00000269137 TFIP11Q9UBB9 837 aaKnown RBP16.3■□□□□ 0.2
SS18-201ENST00000269137 MTMR7Q9Y216 660 aa16.3■□□□□ 0.2
SS18-201ENST00000269137 hCG_1642624A0A1W2PR95 340 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 JAG1P78504 1218 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 APOBEC3FQ8IUX4 373 aaKnown RBP16.29■□□□□ 0.2
SS18-201ENST00000269137 FAM177A1Q8N128 213 aaPredicted RBP16.29■□□□□ 0.2
SS18-201ENST00000269137 TRPM4Q8TD43 1214 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 DEFB129Q9H1M3 183 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 FOXP1Q9H334 677 aaPredicted RBP16.29■□□□□ 0.2
SS18-201ENST00000269137 ASTN2O75129 1339 aaPredicted RBP16.29■□□□□ 0.2
SS18-201ENST00000269137 GOLGA8HP0CJ92 632 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 UBE2HP62256 183 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 ATP2B2Q01814 1243 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 ZNF543Q08ER8 600 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 GPATCH4Q5T3I0 446 aaKnown RBP16.29■□□□□ 0.2
SS18-201ENST00000269137 MYSM1Q5VVJ2 828 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 RASGRP2Q7LDG7 609 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 GPT2Q8TD30 523 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 LEO1Q8WVC0 666 aaPredicted RBP16.29■□□□□ 0.2
SS18-201ENST00000269137 SHISA4Q96DD7 197 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 SPATA32Q96LK8 384 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 PHF20Q9BVI0 1012 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 SH3GLB2Q9NR46 395 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 KCNJ14Q9UNX9 436 aa16.29■□□□□ 0.2
SS18-201ENST00000269137 DDNO94850 711 aaPredicted RBP16.28■□□□□ 0.2
SS18-201ENST00000269137 EPS15P42566 896 aa16.28■□□□□ 0.2
SS18-201ENST00000269137 MIGA2Q7L4E1 593 aa16.28■□□□□ 0.2
SS18-201ENST00000269137 DIS3L2Q8IYB7 885 aaKnown RBP16.28■□□□□ 0.2
SS18-201ENST00000269137 GMCL1P1Q8NEA9 526 aa16.28■□□□□ 0.2
SS18-201ENST00000269137 DCAF4Q8WV16 495 aa16.28■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms